Hb_000349_170

Information

Type -
Description -
Location Contig349: 190425-192395
Sequence    

Annotation

kegg
ID rcu:RCOM_1682160
description cytochrome P450, putative (EC:1.14.13.71)
nr
ID XP_012066137.1
description PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
swissprot
ID Q8VWZ7
description Geraniol 8-hydroxylase OS=Catharanthus roseus GN=CYP76B6 PE=1 SV=1
trembl
ID B9RBW9
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1682160 PE=3 SV=1
Gene Ontology
ID GO:0005506
description geraniol 8-hydroxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36308: 190420-192388
cDNA
(Sanger)
(ID:Location)		 017_B09.ab1: 192161-192378

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000349_170 0.0 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
2 Hb_149985_030 0.0714528562 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
3 Hb_005695_070 0.0887617841 - - Cysteine-rich RLK 29 [Theobroma cacao]
4 Hb_001913_070 0.0925209148 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
5 Hb_022406_010 0.1094464508 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_003767_030 0.111841233 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
7 Hb_000388_040 0.1124832975 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
8 Hb_163140_010 0.1157320094 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
9 Hb_001606_040 0.1186515921 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
10 Hb_001001_010 0.1211271874 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
11 Hb_104014_010 0.1244879828 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
12 Hb_010267_020 0.1313249104 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
13 Hb_006519_020 0.1324508495 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
14 Hb_003935_050 0.1330221494 - - protein with unknown function [Ricinus communis]
15 Hb_000140_250 0.1331185288 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
16 Hb_007919_070 0.1354708306 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
17 Hb_009421_090 0.1376658863 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
18 Hb_010422_020 0.1393258927 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
19 Hb_000809_220 0.1398254022 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
20 Hb_103709_010 0.1405526774 - - hypothetical protein JCGZ_06105 [Jatropha curcas]

Gene co-expression network

sample Hb_000349_170 Hb_000349_170 Hb_149985_030 Hb_149985_030 Hb_000349_170--Hb_149985_030 Hb_005695_070 Hb_005695_070 Hb_000349_170--Hb_005695_070 Hb_001913_070 Hb_001913_070 Hb_000349_170--Hb_001913_070 Hb_022406_010 Hb_022406_010 Hb_000349_170--Hb_022406_010 Hb_003767_030 Hb_003767_030 Hb_000349_170--Hb_003767_030 Hb_000388_040 Hb_000388_040 Hb_000349_170--Hb_000388_040 Hb_149985_030--Hb_022406_010 Hb_149985_030--Hb_005695_070 Hb_149985_030--Hb_001913_070 Hb_001606_040 Hb_001606_040 Hb_149985_030--Hb_001606_040 Hb_103709_010 Hb_103709_010 Hb_149985_030--Hb_103709_010 Hb_001001_010 Hb_001001_010 Hb_005695_070--Hb_001001_010 Hb_010267_020 Hb_010267_020 Hb_005695_070--Hb_010267_020 Hb_000200_270 Hb_000200_270 Hb_005695_070--Hb_000200_270 Hb_005695_070--Hb_022406_010 Hb_010422_020 Hb_010422_020 Hb_001913_070--Hb_010422_020 Hb_104014_010 Hb_104014_010 Hb_001913_070--Hb_104014_010 Hb_001983_040 Hb_001983_040 Hb_001913_070--Hb_001983_040 Hb_000809_220 Hb_000809_220 Hb_001913_070--Hb_000809_220 Hb_022406_010--Hb_001606_040 Hb_006519_020 Hb_006519_020 Hb_022406_010--Hb_006519_020 Hb_012084_010 Hb_012084_010 Hb_022406_010--Hb_012084_010 Hb_169753_010 Hb_169753_010 Hb_022406_010--Hb_169753_010 Hb_003767_030--Hb_000388_040 Hb_009421_090 Hb_009421_090 Hb_003767_030--Hb_009421_090 Hb_000283_090 Hb_000283_090 Hb_003767_030--Hb_000283_090 Hb_003767_030--Hb_010267_020 Hb_003767_030--Hb_000809_220 Hb_012753_150 Hb_012753_150 Hb_000388_040--Hb_012753_150 Hb_002218_050 Hb_002218_050 Hb_000388_040--Hb_002218_050 Hb_000388_040--Hb_010267_020 Hb_007441_290 Hb_007441_290 Hb_000388_040--Hb_007441_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.377528 14.5173 82.5794 12.6415 0 0.0707023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.366841 0.111007 0 1.23924 11.2329

CAGE analysis