Hb_012753_150

Information

Type transcription factor
Description TF Family: GRAS
Location Contig12753: 68525-70525
Sequence    

Annotation

kegg
ID rcu:RCOM_1684380
description DELLA protein RGL1, putative
nr
ID XP_002509714.1
description DELLA protein RGL1, putative [Ricinus communis]
swissprot
ID Q9CAN3
description Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=1 SV=1
trembl
ID B9RC30
description DELLA protein RGL1, putative OS=Ricinus communis GN=RCOM_1684380 PE=4 SV=1
Gene Ontology
ID GO:0003700
description scarecrow-like protein 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08384: 70661-71410
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_150 0.0 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
2 Hb_001761_010 0.1007809102 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
3 Hb_006060_010 0.1058466832 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
4 Hb_000388_040 0.1083431734 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
5 Hb_005568_140 0.1084362894 - - ATP binding protein, putative [Ricinus communis]
6 Hb_004109_100 0.1097550616 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
7 Hb_010267_020 0.1099633434 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
8 Hb_031266_030 0.1112018545 - - Kinase superfamily protein isoform 1 [Theobroma cacao]
9 Hb_002918_220 0.1113627191 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
10 Hb_007441_290 0.1115654423 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
11 Hb_000200_270 0.1145457656 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
12 Hb_033152_060 0.1206642419 - - PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]
13 Hb_003599_060 0.1255189043 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_001755_040 0.1279806867 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
15 Hb_002232_310 0.1292894987 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
16 Hb_000028_530 0.1313213627 - - Protein regulator of cytokinesis, putative [Ricinus communis]
17 Hb_000142_030 0.1320190277 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
18 Hb_000020_080 0.1332060174 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
19 Hb_004422_030 0.1349723069 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
20 Hb_000316_070 0.1353146772 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]

Gene co-expression network

sample Hb_012753_150 Hb_012753_150 Hb_001761_010 Hb_001761_010 Hb_012753_150--Hb_001761_010 Hb_006060_010 Hb_006060_010 Hb_012753_150--Hb_006060_010 Hb_000388_040 Hb_000388_040 Hb_012753_150--Hb_000388_040 Hb_005568_140 Hb_005568_140 Hb_012753_150--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_012753_150--Hb_004109_100 Hb_010267_020 Hb_010267_020 Hb_012753_150--Hb_010267_020 Hb_000028_530 Hb_000028_530 Hb_001761_010--Hb_000028_530 Hb_000365_210 Hb_000365_210 Hb_001761_010--Hb_000365_210 Hb_000960_120 Hb_000960_120 Hb_001761_010--Hb_000960_120 Hb_002232_310 Hb_002232_310 Hb_001761_010--Hb_002232_310 Hb_024973_020 Hb_024973_020 Hb_001761_010--Hb_024973_020 Hb_000260_610 Hb_000260_610 Hb_006060_010--Hb_000260_610 Hb_003878_060 Hb_003878_060 Hb_006060_010--Hb_003878_060 Hb_006060_010--Hb_000960_120 Hb_003119_040 Hb_003119_040 Hb_006060_010--Hb_003119_040 Hb_013344_010 Hb_013344_010 Hb_006060_010--Hb_013344_010 Hb_003767_030 Hb_003767_030 Hb_000388_040--Hb_003767_030 Hb_000349_170 Hb_000349_170 Hb_000388_040--Hb_000349_170 Hb_002218_050 Hb_002218_050 Hb_000388_040--Hb_002218_050 Hb_000388_040--Hb_010267_020 Hb_007441_290 Hb_007441_290 Hb_000388_040--Hb_007441_290 Hb_002918_220 Hb_002918_220 Hb_005568_140--Hb_002918_220 Hb_005568_140--Hb_004109_100 Hb_001571_080 Hb_001571_080 Hb_005568_140--Hb_001571_080 Hb_002170_060 Hb_002170_060 Hb_005568_140--Hb_002170_060 Hb_005568_140--Hb_010267_020 Hb_004422_030 Hb_004422_030 Hb_005568_140--Hb_004422_030 Hb_004109_100--Hb_002918_220 Hb_002243_030 Hb_002243_030 Hb_004109_100--Hb_002243_030 Hb_003777_260 Hb_003777_260 Hb_004109_100--Hb_003777_260 Hb_004109_100--Hb_002170_060 Hb_015299_040 Hb_015299_040 Hb_004109_100--Hb_015299_040 Hb_000200_270 Hb_000200_270 Hb_010267_020--Hb_000200_270 Hb_169753_010 Hb_169753_010 Hb_010267_020--Hb_169753_010 Hb_010267_020--Hb_002918_220 Hb_010267_020--Hb_004422_030 Hb_005695_070 Hb_005695_070 Hb_010267_020--Hb_005695_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150862 1.47711 12.6806 3.98684 0.0576898 0.0894335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0902233 0.0709904 0.168278 0.656649 1.01271

CAGE analysis