Hb_006060_010

Information

Type -
Description -
Location Contig6060: 11789-18320
Sequence    

Annotation

kegg
ID rcu:RCOM_0804600
description cyclin A, putative
nr
ID XP_012078626.1
description PREDICTED: cyclin-A2-2-like [Jatropha curcas]
swissprot
ID Q147G5
description Cyclin-A2-2 OS=Arabidopsis thaliana GN=CYCA2-2 PE=2 SV=1
trembl
ID A0A067KKF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13214 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin-a2-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50766: 11003-17613 , PASA_asmbl_50767: 17680-20047
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006060_010 0.0 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
2 Hb_012753_150 0.1058466832 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
3 Hb_000260_610 0.1236973623 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
4 Hb_003878_060 0.1289026267 - - hypothetical protein B456_007G326900, partial [Gossypium raimondii]
5 Hb_000960_120 0.1292872272 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
6 Hb_003119_040 0.1303989361 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
7 Hb_013344_010 0.132494117 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
8 Hb_003599_060 0.1328667873 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_000656_320 0.1361792384 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
10 Hb_000193_060 0.1410806031 - - PREDICTED: F-box protein At4g35930 [Jatropha curcas]
11 Hb_000395_120 0.1413727193 - - Stellacyanin, putative [Ricinus communis]
12 Hb_033152_060 0.1436147218 - - PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]
13 Hb_001541_190 0.1449424445 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
14 Hb_031266_030 0.1458050482 - - Kinase superfamily protein isoform 1 [Theobroma cacao]
15 Hb_000577_050 0.1461581925 - - -
16 Hb_014497_070 0.1468352589 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
17 Hb_000020_080 0.1482851412 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
18 Hb_001085_160 0.1485180991 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
19 Hb_001761_010 0.1509191486 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
20 Hb_004712_090 0.1512096357 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_006060_010 Hb_006060_010 Hb_012753_150 Hb_012753_150 Hb_006060_010--Hb_012753_150 Hb_000260_610 Hb_000260_610 Hb_006060_010--Hb_000260_610 Hb_003878_060 Hb_003878_060 Hb_006060_010--Hb_003878_060 Hb_000960_120 Hb_000960_120 Hb_006060_010--Hb_000960_120 Hb_003119_040 Hb_003119_040 Hb_006060_010--Hb_003119_040 Hb_013344_010 Hb_013344_010 Hb_006060_010--Hb_013344_010 Hb_001761_010 Hb_001761_010 Hb_012753_150--Hb_001761_010 Hb_000388_040 Hb_000388_040 Hb_012753_150--Hb_000388_040 Hb_005568_140 Hb_005568_140 Hb_012753_150--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_012753_150--Hb_004109_100 Hb_010267_020 Hb_010267_020 Hb_012753_150--Hb_010267_020 Hb_000260_610--Hb_013344_010 Hb_007545_110 Hb_007545_110 Hb_000260_610--Hb_007545_110 Hb_002400_050 Hb_002400_050 Hb_000260_610--Hb_002400_050 Hb_003667_020 Hb_003667_020 Hb_000260_610--Hb_003667_020 Hb_004920_050 Hb_004920_050 Hb_000260_610--Hb_004920_050 Hb_003599_060 Hb_003599_060 Hb_003878_060--Hb_003599_060 Hb_014497_070 Hb_014497_070 Hb_003878_060--Hb_014497_070 Hb_006289_020 Hb_006289_020 Hb_003878_060--Hb_006289_020 Hb_003878_060--Hb_012753_150 Hb_007474_020 Hb_007474_020 Hb_003878_060--Hb_007474_020 Hb_000960_120--Hb_013344_010 Hb_000960_120--Hb_001761_010 Hb_022092_040 Hb_022092_040 Hb_000960_120--Hb_022092_040 Hb_002811_210 Hb_002811_210 Hb_000960_120--Hb_002811_210 Hb_008406_100 Hb_008406_100 Hb_000960_120--Hb_008406_100 Hb_000193_060 Hb_000193_060 Hb_003119_040--Hb_000193_060 Hb_002048_100 Hb_002048_100 Hb_003119_040--Hb_002048_100 Hb_006153_010 Hb_006153_010 Hb_003119_040--Hb_006153_010 Hb_005599_010 Hb_005599_010 Hb_003119_040--Hb_005599_010 Hb_004154_010 Hb_004154_010 Hb_003119_040--Hb_004154_010 Hb_001329_010 Hb_001329_010 Hb_013344_010--Hb_001329_010 Hb_000656_320 Hb_000656_320 Hb_013344_010--Hb_000656_320 Hb_013344_010--Hb_008406_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.32024 2.548 14.56 6.57941 0.139696 0.375775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0903582 0.213265 0.178292 0.964364 0.694928

CAGE analysis