Hb_022092_040

Information

Type -
Description -
Location Contig22092: 26746-27576
Sequence    

Annotation

kegg
ID rcu:RCOM_1176050
description hypothetical protein
nr
ID XP_012088336.1
description PREDICTED: serine/arginine repetitive matrix protein 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25831 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22744: 23031-26205 , PASA_asmbl_22745: 26396-26723 , PASA_asmbl_22746: 26926-27491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022092_040 0.0 - - PREDICTED: serine/arginine repetitive matrix protein 1 [Jatropha curcas]
2 Hb_000960_120 0.1163200382 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
3 Hb_007545_110 0.1176766611 - - catalytic, putative [Ricinus communis]
4 Hb_001761_010 0.1224308978 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
5 Hb_028487_120 0.1436032682 - - PREDICTED: HMG-Y-related protein B-like [Jatropha curcas]
6 Hb_000260_610 0.1479787759 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
7 Hb_002218_050 0.1483401412 - - SSXT family protein isoform 2, partial [Theobroma cacao]
8 Hb_024973_020 0.1490085378 - - Protein regulator of cytokinesis, putative [Ricinus communis]
9 Hb_173029_030 0.1533788643 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012753_150 0.1540981779 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
11 Hb_000388_040 0.1543482376 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
12 Hb_000308_010 0.1569867354 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
13 Hb_007441_290 0.160532312 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
14 Hb_006060_010 0.1658043375 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
15 Hb_000142_030 0.1694330556 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_008406_100 0.1733150724 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
17 Hb_000020_080 0.1747295765 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
18 Hb_002078_230 0.1797162372 - - PREDICTED: HORMA domain-containing protein 1 [Jatropha curcas]
19 Hb_004846_230 0.1804551239 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
20 Hb_038044_010 0.1807417949 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]

Gene co-expression network

sample Hb_022092_040 Hb_022092_040 Hb_000960_120 Hb_000960_120 Hb_022092_040--Hb_000960_120 Hb_007545_110 Hb_007545_110 Hb_022092_040--Hb_007545_110 Hb_001761_010 Hb_001761_010 Hb_022092_040--Hb_001761_010 Hb_028487_120 Hb_028487_120 Hb_022092_040--Hb_028487_120 Hb_000260_610 Hb_000260_610 Hb_022092_040--Hb_000260_610 Hb_002218_050 Hb_002218_050 Hb_022092_040--Hb_002218_050 Hb_013344_010 Hb_013344_010 Hb_000960_120--Hb_013344_010 Hb_000960_120--Hb_001761_010 Hb_002811_210 Hb_002811_210 Hb_000960_120--Hb_002811_210 Hb_006060_010 Hb_006060_010 Hb_000960_120--Hb_006060_010 Hb_008406_100 Hb_008406_100 Hb_000960_120--Hb_008406_100 Hb_038044_010 Hb_038044_010 Hb_007545_110--Hb_038044_010 Hb_007545_110--Hb_000260_610 Hb_024973_020 Hb_024973_020 Hb_007545_110--Hb_024973_020 Hb_000032_200 Hb_000032_200 Hb_007545_110--Hb_000032_200 Hb_176472_020 Hb_176472_020 Hb_007545_110--Hb_176472_020 Hb_012753_150 Hb_012753_150 Hb_001761_010--Hb_012753_150 Hb_000028_530 Hb_000028_530 Hb_001761_010--Hb_000028_530 Hb_000365_210 Hb_000365_210 Hb_001761_010--Hb_000365_210 Hb_002232_310 Hb_002232_310 Hb_001761_010--Hb_002232_310 Hb_001761_010--Hb_024973_020 Hb_001279_050 Hb_001279_050 Hb_028487_120--Hb_001279_050 Hb_028487_120--Hb_008406_100 Hb_000638_260 Hb_000638_260 Hb_028487_120--Hb_000638_260 Hb_028487_120--Hb_000960_120 Hb_028487_120--Hb_024973_020 Hb_000260_610--Hb_013344_010 Hb_000260_610--Hb_006060_010 Hb_002400_050 Hb_002400_050 Hb_000260_610--Hb_002400_050 Hb_003667_020 Hb_003667_020 Hb_000260_610--Hb_003667_020 Hb_004920_050 Hb_004920_050 Hb_000260_610--Hb_004920_050 Hb_000388_040 Hb_000388_040 Hb_002218_050--Hb_000388_040 Hb_114292_010 Hb_114292_010 Hb_002218_050--Hb_114292_010 Hb_001040_050 Hb_001040_050 Hb_002218_050--Hb_001040_050 Hb_005162_120 Hb_005162_120 Hb_002218_050--Hb_005162_120 Hb_001143_200 Hb_001143_200 Hb_002218_050--Hb_001143_200 Hb_000115_190 Hb_000115_190 Hb_002218_050--Hb_000115_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31409 5.27692 34.3964 6.49933 1.43408 0.494328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.256744 0.605663 0.183217 2.48917 1.93212

CAGE analysis