Hb_004920_050

Information

Type -
Description -
Location Contig4920: 36276-43523
Sequence    

Annotation

kegg
ID rcu:RCOM_1347200
description DNA replication licensing factor MCM7, putative
nr
ID XP_002515287.1
description DNA replication licensing factor MCM7, putative [Ricinus communis]
swissprot
ID P43299
description DNA replication licensing factor MCM7 OS=Arabidopsis thaliana GN=MCM7 PE=1 SV=2
trembl
ID B9RNE8
description DNA helicase OS=Ricinus communis GN=RCOM_1347200 PE=3 SV=1
Gene Ontology
ID GO:0005634
description dna replication licensing factor mcm7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45333: 36316-42113
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004920_050 0.0 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
2 Hb_000181_270 0.1005120978 - - ATP binding protein, putative [Ricinus communis]
3 Hb_011485_030 0.1125300397 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
4 Hb_000077_110 0.1168060644 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
5 Hb_000890_020 0.1257861888 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
6 Hb_002518_200 0.1322156435 - - Proliferating cell nuclear antigen [Theobroma cacao]
7 Hb_000566_130 0.1361054484 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
8 Hb_000288_090 0.136741519 - - unnamed protein product [Vitis vinifera]
9 Hb_000003_740 0.1393294345 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
10 Hb_000260_610 0.140685274 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
11 Hb_002965_160 0.1546428852 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
12 Hb_000307_220 0.154905514 - - oxidoreductase family protein [Populus trichocarpa]
13 Hb_002897_010 0.1554584242 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
14 Hb_013834_010 0.1562234314 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
15 Hb_002400_050 0.1575975385 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
16 Hb_013344_010 0.1586444189 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
17 Hb_006970_130 0.1607928301 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
18 Hb_000692_210 0.1615420981 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
19 Hb_002463_050 0.1619074666 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000086_180 0.1629632853 - - hypothetical protein JCGZ_17674 [Jatropha curcas]

Gene co-expression network

sample Hb_004920_050 Hb_004920_050 Hb_000181_270 Hb_000181_270 Hb_004920_050--Hb_000181_270 Hb_011485_030 Hb_011485_030 Hb_004920_050--Hb_011485_030 Hb_000077_110 Hb_000077_110 Hb_004920_050--Hb_000077_110 Hb_000890_020 Hb_000890_020 Hb_004920_050--Hb_000890_020 Hb_002518_200 Hb_002518_200 Hb_004920_050--Hb_002518_200 Hb_000566_130 Hb_000566_130 Hb_004920_050--Hb_000566_130 Hb_000181_270--Hb_011485_030 Hb_000288_090 Hb_000288_090 Hb_000181_270--Hb_000288_090 Hb_000181_270--Hb_002518_200 Hb_000529_040 Hb_000529_040 Hb_000181_270--Hb_000529_040 Hb_000181_270--Hb_000890_020 Hb_011485_030--Hb_000288_090 Hb_005901_030 Hb_005901_030 Hb_011485_030--Hb_005901_030 Hb_011485_030--Hb_000566_130 Hb_011485_030--Hb_002518_200 Hb_000483_080 Hb_000483_080 Hb_000077_110--Hb_000483_080 Hb_000307_220 Hb_000307_220 Hb_000077_110--Hb_000307_220 Hb_000077_110--Hb_000566_130 Hb_093458_020 Hb_093458_020 Hb_000077_110--Hb_093458_020 Hb_002284_260 Hb_002284_260 Hb_000077_110--Hb_002284_260 Hb_002400_050 Hb_002400_050 Hb_000890_020--Hb_002400_050 Hb_002540_070 Hb_002540_070 Hb_000890_020--Hb_002540_070 Hb_000086_180 Hb_000086_180 Hb_000890_020--Hb_000086_180 Hb_000008_390 Hb_000008_390 Hb_000890_020--Hb_000008_390 Hb_000692_210 Hb_000692_210 Hb_002518_200--Hb_000692_210 Hb_000003_740 Hb_000003_740 Hb_002518_200--Hb_000003_740 Hb_000111_390 Hb_000111_390 Hb_002518_200--Hb_000111_390 Hb_000134_030 Hb_000134_030 Hb_002518_200--Hb_000134_030 Hb_000566_130--Hb_093458_020 Hb_000566_130--Hb_000307_220 Hb_000960_090 Hb_000960_090 Hb_000566_130--Hb_000960_090 Hb_000566_130--Hb_002284_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.00115 4.24011 20.5438 12.513 1.71934 1.73114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.693104 0.478889 0.634511 5.99913 1.9528

CAGE analysis