Hb_000003_740

Information

Type -
Description -
Location Contig3: 571858-574163
Sequence    

Annotation

kegg
ID rcu:RCOM_1489420
description hypothetical protein
nr
ID XP_012069079.1
description PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0V5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24857 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31458: 571685-574190 , PASA_asmbl_31459: 574545-575217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_740 0.0 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
2 Hb_002518_200 0.1328668905 - - Proliferating cell nuclear antigen [Theobroma cacao]
3 Hb_000692_210 0.1358530957 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
4 Hb_004920_050 0.1393294345 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
5 Hb_148346_010 0.1409688415 - - -
6 Hb_114943_020 0.1507937937 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]
7 Hb_000015_150 0.1520613998 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
8 Hb_002463_050 0.1655521077 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008250_020 0.1700062242 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
10 Hb_000890_020 0.1707062211 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
11 Hb_000111_390 0.1712311106 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
12 Hb_102437_010 0.1727490127 - - PREDICTED: B-cell receptor-associated protein 31 [Beta vulgaris subsp. vulgaris]
13 Hb_000363_180 0.1736167693 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
14 Hb_186247_010 0.1736877972 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
15 Hb_002897_010 0.1741759548 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
16 Hb_001882_150 0.1742855288 transcription factor TF Family: mTERF -
17 Hb_004837_220 0.1800554241 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
18 Hb_000134_030 0.181183829 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
19 Hb_013834_010 0.1811925087 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
20 Hb_000260_610 0.1851867557 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]

Gene co-expression network

sample Hb_000003_740 Hb_000003_740 Hb_002518_200 Hb_002518_200 Hb_000003_740--Hb_002518_200 Hb_000692_210 Hb_000692_210 Hb_000003_740--Hb_000692_210 Hb_004920_050 Hb_004920_050 Hb_000003_740--Hb_004920_050 Hb_148346_010 Hb_148346_010 Hb_000003_740--Hb_148346_010 Hb_114943_020 Hb_114943_020 Hb_000003_740--Hb_114943_020 Hb_000015_150 Hb_000015_150 Hb_000003_740--Hb_000015_150 Hb_002518_200--Hb_000692_210 Hb_000181_270 Hb_000181_270 Hb_002518_200--Hb_000181_270 Hb_002518_200--Hb_004920_050 Hb_000111_390 Hb_000111_390 Hb_002518_200--Hb_000111_390 Hb_000134_030 Hb_000134_030 Hb_002518_200--Hb_000134_030 Hb_004837_220 Hb_004837_220 Hb_000692_210--Hb_004837_220 Hb_003747_050 Hb_003747_050 Hb_000692_210--Hb_003747_050 Hb_005000_140 Hb_005000_140 Hb_000692_210--Hb_005000_140 Hb_080147_020 Hb_080147_020 Hb_000692_210--Hb_080147_020 Hb_004920_050--Hb_000181_270 Hb_011485_030 Hb_011485_030 Hb_004920_050--Hb_011485_030 Hb_000077_110 Hb_000077_110 Hb_004920_050--Hb_000077_110 Hb_000890_020 Hb_000890_020 Hb_004920_050--Hb_000890_020 Hb_000566_130 Hb_000566_130 Hb_004920_050--Hb_000566_130 Hb_002539_050 Hb_002539_050 Hb_148346_010--Hb_002539_050 Hb_004678_030 Hb_004678_030 Hb_148346_010--Hb_004678_030 Hb_000654_050 Hb_000654_050 Hb_148346_010--Hb_000654_050 Hb_010315_100 Hb_010315_100 Hb_148346_010--Hb_010315_100 Hb_001882_150 Hb_001882_150 Hb_148346_010--Hb_001882_150 Hb_114943_020--Hb_000015_150 Hb_000363_180 Hb_000363_180 Hb_114943_020--Hb_000363_180 Hb_002411_160 Hb_002411_160 Hb_114943_020--Hb_002411_160 Hb_002740_040 Hb_002740_040 Hb_114943_020--Hb_002740_040 Hb_000470_110 Hb_000470_110 Hb_114943_020--Hb_000470_110 Hb_005833_030 Hb_005833_030 Hb_114943_020--Hb_005833_030 Hb_001001_090 Hb_001001_090 Hb_000015_150--Hb_001001_090 Hb_000649_330 Hb_000649_330 Hb_000015_150--Hb_000649_330 Hb_002463_050 Hb_002463_050 Hb_000015_150--Hb_002463_050 Hb_000015_150--Hb_002411_160 Hb_027043_010 Hb_027043_010 Hb_000015_150--Hb_027043_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.385035 1.43696 2.76358 2.15459 0.281385 0.57155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0610523 0.048032 0.0903101 0.833778 0.25142

CAGE analysis