Hb_003747_050

Information

Type -
Description -
Location Contig3747: 39744-40784
Sequence    

Annotation

kegg
ID rcu:RCOM_1443640
description WD-repeat protein, putative
nr
ID XP_012067415.1
description PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
swissprot
ID Q9LPV9
description WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1
trembl
ID A0A067LCS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26917 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38207: 39668-40948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_050 0.0 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
2 Hb_000803_090 0.1075591998 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
3 Hb_011671_110 0.1144458288 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
4 Hb_047442_010 0.1207757926 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
5 Hb_012787_030 0.1207878587 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
6 Hb_002600_130 0.121302226 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
7 Hb_000317_190 0.1219591214 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
8 Hb_000062_360 0.1224664899 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
9 Hb_005941_020 0.1262339475 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
10 Hb_005394_010 0.1280472395 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
11 Hb_001621_110 0.1300113607 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]
12 Hb_011609_010 0.1325639317 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
13 Hb_001776_200 0.133340432 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
14 Hb_000212_300 0.1341603481 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
15 Hb_000692_210 0.1345965149 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
16 Hb_001894_160 0.1376113621 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007777_010 0.1383990949 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
18 Hb_000008_390 0.1427014585 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
19 Hb_124951_010 0.1465386995 - - chitinase-like protein [Hevea brasiliensis]
20 Hb_000684_100 0.1473976939 - - PREDICTED: cell number regulator 8 [Jatropha curcas]

Gene co-expression network

sample Hb_003747_050 Hb_003747_050 Hb_000803_090 Hb_000803_090 Hb_003747_050--Hb_000803_090 Hb_011671_110 Hb_011671_110 Hb_003747_050--Hb_011671_110 Hb_047442_010 Hb_047442_010 Hb_003747_050--Hb_047442_010 Hb_012787_030 Hb_012787_030 Hb_003747_050--Hb_012787_030 Hb_002600_130 Hb_002600_130 Hb_003747_050--Hb_002600_130 Hb_000317_190 Hb_000317_190 Hb_003747_050--Hb_000317_190 Hb_011609_010 Hb_011609_010 Hb_000803_090--Hb_011609_010 Hb_000008_390 Hb_000008_390 Hb_000803_090--Hb_000008_390 Hb_001624_040 Hb_001624_040 Hb_000803_090--Hb_001624_040 Hb_002301_210 Hb_002301_210 Hb_000803_090--Hb_002301_210 Hb_000631_090 Hb_000631_090 Hb_000803_090--Hb_000631_090 Hb_001894_160 Hb_001894_160 Hb_011671_110--Hb_001894_160 Hb_005941_020 Hb_005941_020 Hb_011671_110--Hb_005941_020 Hb_033930_010 Hb_033930_010 Hb_011671_110--Hb_033930_010 Hb_015026_020 Hb_015026_020 Hb_011671_110--Hb_015026_020 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_005394_010 Hb_005394_010 Hb_011671_110--Hb_005394_010 Hb_047442_010--Hb_011671_110 Hb_002965_070 Hb_002965_070 Hb_047442_010--Hb_002965_070 Hb_047442_010--Hb_005394_010 Hb_047442_010--Hb_000317_190 Hb_000111_390 Hb_000111_390 Hb_047442_010--Hb_000111_390 Hb_047442_010--Hb_001894_160 Hb_012787_030--Hb_015026_020 Hb_012787_030--Hb_001894_160 Hb_000928_250 Hb_000928_250 Hb_012787_030--Hb_000928_250 Hb_003106_200 Hb_003106_200 Hb_012787_030--Hb_003106_200 Hb_012787_030--Hb_011671_110 Hb_003529_180 Hb_003529_180 Hb_002600_130--Hb_003529_180 Hb_124951_010 Hb_124951_010 Hb_002600_130--Hb_124951_010 Hb_000009_220 Hb_000009_220 Hb_002600_130--Hb_000009_220 Hb_002600_130--Hb_011609_010 Hb_004725_030 Hb_004725_030 Hb_002600_130--Hb_004725_030 Hb_000317_190--Hb_005941_020 Hb_000317_190--Hb_124951_010 Hb_000317_190--Hb_001894_160 Hb_000317_190--Hb_011671_110 Hb_000317_190--Hb_015026_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5931 21.7725 42.7436 13.8337 4.27527 5.95661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47142 2.91997 1.18966 7.25216 7.46845

CAGE analysis