Hb_002301_210

Information

Type -
Description -
Location Contig2301: 213744-221145
Sequence    

Annotation

kegg
ID rcu:RCOM_1673790
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012091645.1
description PREDICTED: receptor-like protein kinase At5g59670 isoform X2 [Jatropha curcas]
swissprot
ID Q9ZQR3
description Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 OS=Arabidopsis thaliana GN=At2g14510 PE=2 SV=1
trembl
ID B9RBB1
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1673790 PE=4 SV=1
Gene Ontology
ID GO:0005768
description receptor like protein 4 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24142: 213759-221060 , PASA_asmbl_24143: 216153-216324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_210 0.0 - - PREDICTED: receptor-like protein kinase At5g59670 isoform X2 [Jatropha curcas]
2 Hb_001624_040 0.1044593796 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
3 Hb_001250_040 0.1169771389 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
4 Hb_000803_090 0.1200276274 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
5 Hb_001689_050 0.125082651 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
6 Hb_000076_090 0.1272043627 - - protein with unknown function [Ricinus communis]
7 Hb_003894_060 0.129822253 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005214_070 0.1305847724 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
9 Hb_002249_040 0.138366242 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1-like [Jatropha curcas]
10 Hb_003683_030 0.1417159503 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
11 Hb_011609_010 0.1457410378 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
12 Hb_161549_010 0.1470522795 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000136_020 0.1474370811 - - PREDICTED: F-box/kelch-repeat protein At1g80440-like [Jatropha curcas]
14 Hb_001021_100 0.1495549702 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
15 Hb_001663_130 0.1558723656 - - acyl-CoA thioesterase, putative [Ricinus communis]
16 Hb_001001_090 0.1564421314 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
17 Hb_001863_340 0.1585030289 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
18 Hb_054865_020 0.1586807792 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
19 Hb_000093_140 0.1599970522 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
20 Hb_001571_030 0.1606967201 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_210 Hb_002301_210 Hb_001624_040 Hb_001624_040 Hb_002301_210--Hb_001624_040 Hb_001250_040 Hb_001250_040 Hb_002301_210--Hb_001250_040 Hb_000803_090 Hb_000803_090 Hb_002301_210--Hb_000803_090 Hb_001689_050 Hb_001689_050 Hb_002301_210--Hb_001689_050 Hb_000076_090 Hb_000076_090 Hb_002301_210--Hb_000076_090 Hb_003894_060 Hb_003894_060 Hb_002301_210--Hb_003894_060 Hb_011609_010 Hb_011609_010 Hb_001624_040--Hb_011609_010 Hb_000453_230 Hb_000453_230 Hb_001624_040--Hb_000453_230 Hb_004116_160 Hb_004116_160 Hb_001624_040--Hb_004116_160 Hb_000418_090 Hb_000418_090 Hb_001624_040--Hb_000418_090 Hb_001624_040--Hb_000803_090 Hb_001250_040--Hb_001689_050 Hb_003683_030 Hb_003683_030 Hb_001250_040--Hb_003683_030 Hb_000136_020 Hb_000136_020 Hb_001250_040--Hb_000136_020 Hb_001571_030 Hb_001571_030 Hb_001250_040--Hb_001571_030 Hb_007594_080 Hb_007594_080 Hb_001250_040--Hb_007594_080 Hb_001250_040--Hb_001624_040 Hb_000803_090--Hb_011609_010 Hb_003747_050 Hb_003747_050 Hb_000803_090--Hb_003747_050 Hb_000008_390 Hb_000008_390 Hb_000803_090--Hb_000008_390 Hb_000631_090 Hb_000631_090 Hb_000803_090--Hb_000631_090 Hb_001689_050--Hb_003683_030 Hb_001689_050--Hb_007594_080 Hb_001689_050--Hb_003894_060 Hb_004837_210 Hb_004837_210 Hb_001689_050--Hb_004837_210 Hb_001953_100 Hb_001953_100 Hb_001689_050--Hb_001953_100 Hb_000076_090--Hb_000136_020 Hb_107078_010 Hb_107078_010 Hb_000076_090--Hb_107078_010 Hb_001975_050 Hb_001975_050 Hb_000076_090--Hb_001975_050 Hb_000076_090--Hb_001250_040 Hb_000093_140 Hb_000093_140 Hb_000076_090--Hb_000093_140 Hb_001663_130 Hb_001663_130 Hb_003894_060--Hb_001663_130 Hb_003894_060--Hb_003683_030 Hb_005214_070 Hb_005214_070 Hb_003894_060--Hb_005214_070 Hb_003894_060--Hb_000093_140 Hb_001001_090 Hb_001001_090 Hb_003894_060--Hb_001001_090 Hb_002432_050 Hb_002432_050 Hb_003894_060--Hb_002432_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.78542 16.2632 42.4063 11.7264 7.30164 9.87292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.838425 0.379002 1.36451 6.55566 19.3905

CAGE analysis