Hb_000418_090

Information

Type -
Description -
Location Contig418: 101453-112262
Sequence    

Annotation

kegg
ID rcu:RCOM_1091160
description abc transporter, putative (EC:3.6.3.28)
nr
ID AIU41647.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9ZU35
description ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=2 SV=1
trembl
ID A0A097P9S5
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCG7 PE=2 SV=1
Gene Ontology
ID GO:0016020
description abc transporter family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41321: 101438-112224 , PASA_asmbl_41323: 104270-104521
cDNA
(Sanger)
(ID:Location)		 002_P10.ab1: 108073-112209

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_090 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_000313_290 0.083108861 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_001624_040 0.1133309654 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
4 Hb_000331_340 0.115089999 - - PREDICTED: uncharacterized protein LOC105640234 [Jatropha curcas]
5 Hb_000453_230 0.123468907 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_000010_130 0.1407825297 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic [Pyrus x bretschneideri]
7 Hb_001250_040 0.1438409624 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
8 Hb_002249_040 0.1443586513 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1-like [Jatropha curcas]
9 Hb_002447_050 0.1460840783 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_003683_030 0.1472720496 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
11 Hb_027380_210 0.1487344741 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
12 Hb_004254_100 0.1489153032 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
13 Hb_000264_180 0.1489929825 - - PREDICTED: uncharacterized protein LOC100777318 [Glycine max]
14 Hb_004837_020 0.1491082282 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
15 Hb_003529_140 0.1494526466 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
16 Hb_006569_040 0.1554621146 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
17 Hb_001959_240 0.1557509527 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
18 Hb_002016_010 0.1566031748 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
19 Hb_000424_070 0.1578373627 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
20 Hb_000665_150 0.1578833919 - - heparanase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000418_090 Hb_000418_090 Hb_000313_290 Hb_000313_290 Hb_000418_090--Hb_000313_290 Hb_001624_040 Hb_001624_040 Hb_000418_090--Hb_001624_040 Hb_000331_340 Hb_000331_340 Hb_000418_090--Hb_000331_340 Hb_000453_230 Hb_000453_230 Hb_000418_090--Hb_000453_230 Hb_000010_130 Hb_000010_130 Hb_000418_090--Hb_000010_130 Hb_001250_040 Hb_001250_040 Hb_000418_090--Hb_001250_040 Hb_000313_290--Hb_001624_040 Hb_000313_290--Hb_000331_340 Hb_003683_030 Hb_003683_030 Hb_000313_290--Hb_003683_030 Hb_000313_290--Hb_001250_040 Hb_000313_290--Hb_000010_130 Hb_011609_010 Hb_011609_010 Hb_001624_040--Hb_011609_010 Hb_002301_210 Hb_002301_210 Hb_001624_040--Hb_002301_210 Hb_001624_040--Hb_000453_230 Hb_004116_160 Hb_004116_160 Hb_001624_040--Hb_004116_160 Hb_000803_090 Hb_000803_090 Hb_001624_040--Hb_000803_090 Hb_002447_050 Hb_002447_050 Hb_000331_340--Hb_002447_050 Hb_000331_340--Hb_003683_030 Hb_000302_190 Hb_000302_190 Hb_000331_340--Hb_000302_190 Hb_003529_140 Hb_003529_140 Hb_000331_340--Hb_003529_140 Hb_004871_010 Hb_004871_010 Hb_000331_340--Hb_004871_010 Hb_004837_020 Hb_004837_020 Hb_000453_230--Hb_004837_020 Hb_027380_210 Hb_027380_210 Hb_000453_230--Hb_027380_210 Hb_000453_230--Hb_002447_050 Hb_000665_150 Hb_000665_150 Hb_000453_230--Hb_000665_150 Hb_161549_010 Hb_161549_010 Hb_000453_230--Hb_161549_010 Hb_000836_540 Hb_000836_540 Hb_000453_230--Hb_000836_540 Hb_015292_040 Hb_015292_040 Hb_000010_130--Hb_015292_040 Hb_000424_070 Hb_000424_070 Hb_000010_130--Hb_000424_070 Hb_030131_020 Hb_030131_020 Hb_000010_130--Hb_030131_020 Hb_006618_070 Hb_006618_070 Hb_000010_130--Hb_006618_070 Hb_001689_050 Hb_001689_050 Hb_001250_040--Hb_001689_050 Hb_001250_040--Hb_003683_030 Hb_000136_020 Hb_000136_020 Hb_001250_040--Hb_000136_020 Hb_001571_030 Hb_001571_030 Hb_001250_040--Hb_001571_030 Hb_007594_080 Hb_007594_080 Hb_001250_040--Hb_007594_080 Hb_001250_040--Hb_001624_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.55641 17.3322 38.5717 5.2755 13.0763 9.62251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62724 2.54937 1.53836 6.3257 27.8924

CAGE analysis