Hb_002447_050

Information

Type -
Description -
Location Contig2447: 44978-48527
Sequence    

Annotation

kegg
ID rcu:RCOM_0964680
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002517779.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9SCP4
description Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=3 SV=1
trembl
ID B9RVL0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0964680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25520: 45153-45414 , PASA_asmbl_25521: 46230-46649 , PASA_asmbl_25522: 46809-46962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002447_050 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000453_230 0.084111764 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_001663_130 0.089451252 - - acyl-CoA thioesterase, putative [Ricinus communis]
4 Hb_029552_020 0.0913187975 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000529_130 0.0958535367 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
6 Hb_000331_340 0.0959947515 - - PREDICTED: uncharacterized protein LOC105640234 [Jatropha curcas]
7 Hb_000300_560 0.0970938373 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
8 Hb_000482_050 0.1018506297 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
9 Hb_007594_080 0.1022140576 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
10 Hb_003683_030 0.1028148594 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
11 Hb_004837_020 0.103435933 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
12 Hb_003849_160 0.1036182155 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
13 Hb_011188_010 0.1038482283 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
14 Hb_000302_190 0.1040073841 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
15 Hb_004346_040 0.1043307602 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
16 Hb_001396_020 0.1063427903 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
17 Hb_000594_060 0.1066118392 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
18 Hb_000562_070 0.1071551079 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
19 Hb_000260_160 0.1091892521 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
20 Hb_001140_180 0.1109568778 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002447_050 Hb_002447_050 Hb_000453_230 Hb_000453_230 Hb_002447_050--Hb_000453_230 Hb_001663_130 Hb_001663_130 Hb_002447_050--Hb_001663_130 Hb_029552_020 Hb_029552_020 Hb_002447_050--Hb_029552_020 Hb_000529_130 Hb_000529_130 Hb_002447_050--Hb_000529_130 Hb_000331_340 Hb_000331_340 Hb_002447_050--Hb_000331_340 Hb_000300_560 Hb_000300_560 Hb_002447_050--Hb_000300_560 Hb_004837_020 Hb_004837_020 Hb_000453_230--Hb_004837_020 Hb_027380_210 Hb_027380_210 Hb_000453_230--Hb_027380_210 Hb_000665_150 Hb_000665_150 Hb_000453_230--Hb_000665_150 Hb_161549_010 Hb_161549_010 Hb_000453_230--Hb_161549_010 Hb_000836_540 Hb_000836_540 Hb_000453_230--Hb_000836_540 Hb_001663_130--Hb_000300_560 Hb_003894_060 Hb_003894_060 Hb_001663_130--Hb_003894_060 Hb_001160_110 Hb_001160_110 Hb_001663_130--Hb_001160_110 Hb_007594_080 Hb_007594_080 Hb_001663_130--Hb_007594_080 Hb_011188_010 Hb_011188_010 Hb_001663_130--Hb_011188_010 Hb_001140_180 Hb_001140_180 Hb_029552_020--Hb_001140_180 Hb_001279_020 Hb_001279_020 Hb_029552_020--Hb_001279_020 Hb_005305_130 Hb_005305_130 Hb_029552_020--Hb_005305_130 Hb_029552_020--Hb_000529_130 Hb_002809_160 Hb_002809_160 Hb_029552_020--Hb_002809_160 Hb_000562_070 Hb_000562_070 Hb_029552_020--Hb_000562_070 Hb_004994_350 Hb_004994_350 Hb_000529_130--Hb_004994_350 Hb_000529_130--Hb_000562_070 Hb_000529_130--Hb_001279_020 Hb_001396_020 Hb_001396_020 Hb_000529_130--Hb_001396_020 Hb_003849_160 Hb_003849_160 Hb_000529_130--Hb_003849_160 Hb_003683_030 Hb_003683_030 Hb_000331_340--Hb_003683_030 Hb_000302_190 Hb_000302_190 Hb_000331_340--Hb_000302_190 Hb_003529_140 Hb_003529_140 Hb_000331_340--Hb_003529_140 Hb_004871_010 Hb_004871_010 Hb_000331_340--Hb_004871_010 Hb_000418_090 Hb_000418_090 Hb_000331_340--Hb_000418_090 Hb_000300_560--Hb_001396_020 Hb_000300_560--Hb_011188_010 Hb_000482_050 Hb_000482_050 Hb_000300_560--Hb_000482_050 Hb_004577_010 Hb_004577_010 Hb_000300_560--Hb_004577_010 Hb_021596_020 Hb_021596_020 Hb_000300_560--Hb_021596_020 Hb_000300_560--Hb_001279_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47762 4.18218 7.69412 3.55487 2.22182 1.55411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.657876 0.881875 0.471698 2.41183 7.15615

CAGE analysis