Hb_000665_150

Information

Type -
Description -
Location Contig665: 165953-168934
Sequence    

Annotation

kegg
ID rcu:RCOM_0923130
description heparanase, putative
nr
ID XP_002515478.1
description heparanase, putative [Ricinus communis]
swissprot
ID Q9FZP1
description Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2 SV=2
trembl
ID B9RP09
description Heparanase, putative OS=Ricinus communis GN=RCOM_0923130 PE=4 SV=1
Gene Ontology
ID GO:0016020
description heparanase-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_150 0.0 - - heparanase, putative [Ricinus communis]
2 Hb_000453_230 0.0957136494 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_004837_020 0.100509641 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
4 Hb_000260_160 0.1039590956 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
5 Hb_000665_070 0.1211464179 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Jatropha curcas]
6 Hb_003529_140 0.1268121583 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
7 Hb_004162_220 0.1306255616 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
8 Hb_002447_050 0.1364214834 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_008120_040 0.1364782562 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
10 Hb_000404_030 0.136894073 - - PREDICTED: protein NAP1 [Jatropha curcas]
11 Hb_000836_540 0.1370179081 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
12 Hb_000331_340 0.1399974762 - - PREDICTED: uncharacterized protein LOC105640234 [Jatropha curcas]
13 Hb_000300_560 0.1401564656 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
14 Hb_002249_030 0.1426863763 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
15 Hb_001488_210 0.1429424271 - - PREDICTED: protein RIK [Jatropha curcas]
16 Hb_000878_160 0.1437667767 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
17 Hb_003216_060 0.1455982997 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
18 Hb_004577_010 0.1456805036 - - PREDICTED: transmembrane protein 45A [Prunus mume]
19 Hb_002686_410 0.1463981657 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
20 Hb_002411_190 0.1479735208 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]

Gene co-expression network

sample Hb_000665_150 Hb_000665_150 Hb_000453_230 Hb_000453_230 Hb_000665_150--Hb_000453_230 Hb_004837_020 Hb_004837_020 Hb_000665_150--Hb_004837_020 Hb_000260_160 Hb_000260_160 Hb_000665_150--Hb_000260_160 Hb_000665_070 Hb_000665_070 Hb_000665_150--Hb_000665_070 Hb_003529_140 Hb_003529_140 Hb_000665_150--Hb_003529_140 Hb_004162_220 Hb_004162_220 Hb_000665_150--Hb_004162_220 Hb_000453_230--Hb_004837_020 Hb_027380_210 Hb_027380_210 Hb_000453_230--Hb_027380_210 Hb_002447_050 Hb_002447_050 Hb_000453_230--Hb_002447_050 Hb_161549_010 Hb_161549_010 Hb_000453_230--Hb_161549_010 Hb_000836_540 Hb_000836_540 Hb_000453_230--Hb_000836_540 Hb_004837_020--Hb_000665_070 Hb_000771_170 Hb_000771_170 Hb_004837_020--Hb_000771_170 Hb_007576_180 Hb_007576_180 Hb_004837_020--Hb_007576_180 Hb_004837_020--Hb_002447_050 Hb_011188_010 Hb_011188_010 Hb_000260_160--Hb_011188_010 Hb_008120_040 Hb_008120_040 Hb_000260_160--Hb_008120_040 Hb_000933_110 Hb_000933_110 Hb_000260_160--Hb_000933_110 Hb_004577_010 Hb_004577_010 Hb_000260_160--Hb_004577_010 Hb_013968_010 Hb_013968_010 Hb_000260_160--Hb_013968_010 Hb_004117_270 Hb_004117_270 Hb_000260_160--Hb_004117_270 Hb_000665_070--Hb_004162_220 Hb_000665_070--Hb_000260_160 Hb_000665_070--Hb_013968_010 Hb_004629_030 Hb_004629_030 Hb_000665_070--Hb_004629_030 Hb_001484_090 Hb_001484_090 Hb_000665_070--Hb_001484_090 Hb_006569_040 Hb_006569_040 Hb_003529_140--Hb_006569_040 Hb_010174_090 Hb_010174_090 Hb_003529_140--Hb_010174_090 Hb_001828_120 Hb_001828_120 Hb_003529_140--Hb_001828_120 Hb_002600_070 Hb_002600_070 Hb_003529_140--Hb_002600_070 Hb_000555_020 Hb_000555_020 Hb_003529_140--Hb_000555_020 Hb_000311_120 Hb_000311_120 Hb_003529_140--Hb_000311_120 Hb_003058_140 Hb_003058_140 Hb_004162_220--Hb_003058_140 Hb_004162_220--Hb_004577_010 Hb_000172_360 Hb_000172_360 Hb_004162_220--Hb_000172_360 Hb_000976_110 Hb_000976_110 Hb_004162_220--Hb_000976_110 Hb_006816_010 Hb_006816_010 Hb_004162_220--Hb_006816_010 Hb_000109_260 Hb_000109_260 Hb_004162_220--Hb_000109_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126021 0.401666 0.59818 0.119665 0.143696 0.156535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0575548 0.158485 0.042649 0.270865 0.522514

CAGE analysis