Hb_008120_040

Information

Type -
Description -
Location Contig8120: 79730-84505
Sequence    

Annotation

kegg
ID rcu:RCOM_0565090
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_012065734.1
description PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
swissprot
ID C0LGH3
description Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=2 SV=2
trembl
ID A0A067L4K9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26556 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59289: 79865-81354 , PASA_asmbl_59290: 82073-83370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008120_040 0.0 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
2 Hb_000673_010 0.0863758821 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
3 Hb_015807_080 0.0899762339 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
4 Hb_001766_070 0.0960614681 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000260_160 0.0963244562 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
6 Hb_000979_140 0.1029302503 - - kinase family protein [Populus trichocarpa]
7 Hb_000506_110 0.1030841875 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
8 Hb_004117_270 0.1064655586 - - -
9 Hb_000445_210 0.1065637224 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
10 Hb_000137_010 0.1069521092 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
11 Hb_000160_140 0.1072803424 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
12 Hb_007416_260 0.1105288206 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
13 Hb_003725_010 0.115177032 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
14 Hb_003058_140 0.1168148853 - - conserved hypothetical protein [Ricinus communis]
15 Hb_104920_010 0.1183830632 - - hypothetical protein VITISV_031859 [Vitis vinifera]
16 Hb_004577_010 0.1188708585 - - PREDICTED: transmembrane protein 45A [Prunus mume]
17 Hb_005235_070 0.1190701222 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
18 Hb_000933_110 0.1204260284 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
19 Hb_000270_600 0.1224333666 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
20 Hb_004659_010 0.1226992883 - - Guanine nucleotide-binding subunit beta-2 [Gossypium arboreum]

Gene co-expression network

sample Hb_008120_040 Hb_008120_040 Hb_000673_010 Hb_000673_010 Hb_008120_040--Hb_000673_010 Hb_015807_080 Hb_015807_080 Hb_008120_040--Hb_015807_080 Hb_001766_070 Hb_001766_070 Hb_008120_040--Hb_001766_070 Hb_000260_160 Hb_000260_160 Hb_008120_040--Hb_000260_160 Hb_000979_140 Hb_000979_140 Hb_008120_040--Hb_000979_140 Hb_000506_110 Hb_000506_110 Hb_008120_040--Hb_000506_110 Hb_000673_010--Hb_001766_070 Hb_005235_070 Hb_005235_070 Hb_000673_010--Hb_005235_070 Hb_000137_010 Hb_000137_010 Hb_000673_010--Hb_000137_010 Hb_000603_190 Hb_000603_190 Hb_000673_010--Hb_000603_190 Hb_001409_060 Hb_001409_060 Hb_000673_010--Hb_001409_060 Hb_000086_640 Hb_000086_640 Hb_015807_080--Hb_000086_640 Hb_004117_270 Hb_004117_270 Hb_015807_080--Hb_004117_270 Hb_104920_010 Hb_104920_010 Hb_015807_080--Hb_104920_010 Hb_000753_140 Hb_000753_140 Hb_015807_080--Hb_000753_140 Hb_005941_020 Hb_005941_020 Hb_015807_080--Hb_005941_020 Hb_000787_080 Hb_000787_080 Hb_001766_070--Hb_000787_080 Hb_001766_070--Hb_000137_010 Hb_000270_600 Hb_000270_600 Hb_001766_070--Hb_000270_600 Hb_001766_070--Hb_001409_060 Hb_011188_010 Hb_011188_010 Hb_000260_160--Hb_011188_010 Hb_000933_110 Hb_000933_110 Hb_000260_160--Hb_000933_110 Hb_004577_010 Hb_004577_010 Hb_000260_160--Hb_004577_010 Hb_013968_010 Hb_013968_010 Hb_000260_160--Hb_013968_010 Hb_000260_160--Hb_004117_270 Hb_001729_020 Hb_001729_020 Hb_000979_140--Hb_001729_020 Hb_000452_030 Hb_000452_030 Hb_000979_140--Hb_000452_030 Hb_004052_110 Hb_004052_110 Hb_000979_140--Hb_004052_110 Hb_000015_090 Hb_000015_090 Hb_000979_140--Hb_000015_090 Hb_000197_180 Hb_000197_180 Hb_000979_140--Hb_000197_180 Hb_007416_260 Hb_007416_260 Hb_000979_140--Hb_007416_260 Hb_003462_180 Hb_003462_180 Hb_000506_110--Hb_003462_180 Hb_002259_170 Hb_002259_170 Hb_000506_110--Hb_002259_170 Hb_001511_090 Hb_001511_090 Hb_000506_110--Hb_001511_090 Hb_000160_140 Hb_000160_140 Hb_000506_110--Hb_000160_140 Hb_001269_370 Hb_001269_370 Hb_000506_110--Hb_001269_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.09279 11.8316 14.692 5.41747 1.95288 2.29788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78353 4.62827 2.04156 4.24946 10.9903

CAGE analysis