Hb_000603_190

Information

Type -
Description -
Location Contig603: 183546-185181
Sequence    

Annotation

kegg
ID rcu:RCOM_0707610
description hypothetical protein
nr
ID XP_012077185.1
description PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07592 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50656: 183640-185178
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_190 0.0 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
2 Hb_000179_190 0.0800093302 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
3 Hb_000673_010 0.0931559525 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
4 Hb_008642_060 0.0934677499 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
5 Hb_003925_060 0.0956674945 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
6 Hb_000008_280 0.0960770715 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
7 Hb_002248_130 0.1014651497 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
8 Hb_017214_040 0.1022836416 - - PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]
9 Hb_001396_070 0.1036986994 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003540_250 0.1051495759 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
11 Hb_002056_100 0.1054098104 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
12 Hb_005305_100 0.1065205599 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
13 Hb_002600_070 0.1087749305 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
14 Hb_006615_030 0.1089009363 - - prolyl oligopeptidase family protein [Populus trichocarpa]
15 Hb_000030_140 0.109050977 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
16 Hb_002811_040 0.1107550315 - - 5'->3' exoribonuclease, putative [Ricinus communis]
17 Hb_003939_060 0.1126526102 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000806_030 0.1130560145 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
19 Hb_001635_210 0.1144310661 - - PREDICTED: protein EARLY FLOWERING 3 isoform X1 [Jatropha curcas]
20 Hb_003929_210 0.1157207474 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000603_190 Hb_000603_190 Hb_000179_190 Hb_000179_190 Hb_000603_190--Hb_000179_190 Hb_000673_010 Hb_000673_010 Hb_000603_190--Hb_000673_010 Hb_008642_060 Hb_008642_060 Hb_000603_190--Hb_008642_060 Hb_003925_060 Hb_003925_060 Hb_000603_190--Hb_003925_060 Hb_000008_280 Hb_000008_280 Hb_000603_190--Hb_000008_280 Hb_002248_130 Hb_002248_130 Hb_000603_190--Hb_002248_130 Hb_000110_350 Hb_000110_350 Hb_000179_190--Hb_000110_350 Hb_017214_040 Hb_017214_040 Hb_000179_190--Hb_017214_040 Hb_000445_060 Hb_000445_060 Hb_000179_190--Hb_000445_060 Hb_003929_210 Hb_003929_210 Hb_000179_190--Hb_003929_210 Hb_005305_100 Hb_005305_100 Hb_000179_190--Hb_005305_100 Hb_170077_010 Hb_170077_010 Hb_000179_190--Hb_170077_010 Hb_001766_070 Hb_001766_070 Hb_000673_010--Hb_001766_070 Hb_008120_040 Hb_008120_040 Hb_000673_010--Hb_008120_040 Hb_005235_070 Hb_005235_070 Hb_000673_010--Hb_005235_070 Hb_000137_010 Hb_000137_010 Hb_000673_010--Hb_000137_010 Hb_001409_060 Hb_001409_060 Hb_000673_010--Hb_001409_060 Hb_011457_140 Hb_011457_140 Hb_008642_060--Hb_011457_140 Hb_000358_220 Hb_000358_220 Hb_008642_060--Hb_000358_220 Hb_008642_060--Hb_003929_210 Hb_008642_060--Hb_000179_190 Hb_008642_060--Hb_000008_280 Hb_000030_140 Hb_000030_140 Hb_008642_060--Hb_000030_140 Hb_009178_010 Hb_009178_010 Hb_003925_060--Hb_009178_010 Hb_001396_070 Hb_001396_070 Hb_003925_060--Hb_001396_070 Hb_000640_190 Hb_000640_190 Hb_003925_060--Hb_000640_190 Hb_002249_020 Hb_002249_020 Hb_003925_060--Hb_002249_020 Hb_001277_340 Hb_001277_340 Hb_003925_060--Hb_001277_340 Hb_002686_410 Hb_002686_410 Hb_003925_060--Hb_002686_410 Hb_013405_180 Hb_013405_180 Hb_000008_280--Hb_013405_180 Hb_000300_030 Hb_000300_030 Hb_000008_280--Hb_000300_030 Hb_000008_280--Hb_000358_220 Hb_000008_280--Hb_000179_190 Hb_000008_280--Hb_011457_140 Hb_006615_030 Hb_006615_030 Hb_002248_130--Hb_006615_030 Hb_003540_250 Hb_003540_250 Hb_002248_130--Hb_003540_250 Hb_002811_040 Hb_002811_040 Hb_002248_130--Hb_002811_040 Hb_005288_140 Hb_005288_140 Hb_002248_130--Hb_005288_140 Hb_002248_130--Hb_000179_190 Hb_002248_130--Hb_017214_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1673 54.2092 45.1305 28.1954 15.5647 25.8781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6083 18.1863 9.53996 14.3404 46.0789

CAGE analysis