Hb_009178_010

Information

Type -
Description -
Location Contig9178: 3147-8699
Sequence    

Annotation

kegg
ID rcu:RCOM_0204720
description hypothetical protein
nr
ID XP_012076335.1
description PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
swissprot
ID Q949W6
description Protein KAKU4 OS=Arabidopsis thaliana GN=KAKU4 PE=1 SV=1
trembl
ID A0A067KEL0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07014 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62299: 3235-6854 , PASA_asmbl_62300: 8533-8636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009178_010 0.0 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
2 Hb_004718_060 0.0593552095 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
3 Hb_000260_760 0.0620329761 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
4 Hb_002686_410 0.0625844546 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
5 Hb_000034_110 0.0678622123 - - sentrin/sumo-specific protease, putative [Ricinus communis]
6 Hb_000030_140 0.0706480474 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
7 Hb_000956_040 0.0737706142 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
8 Hb_003925_060 0.0742852141 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
9 Hb_005333_140 0.0745339384 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
10 Hb_000172_360 0.0752982525 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
11 Hb_033642_120 0.0761460653 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
12 Hb_005403_010 0.0804757677 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
13 Hb_002461_020 0.0814856622 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
14 Hb_000640_190 0.0816358646 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
15 Hb_000878_160 0.0817628075 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
16 Hb_001009_120 0.0833752739 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
17 Hb_000046_600 0.0834268939 - - PREDICTED: cullin-1-like [Jatropha curcas]
18 Hb_000796_120 0.0844710318 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
19 Hb_005305_100 0.0869332142 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
20 Hb_005873_020 0.0889847054 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]

Gene co-expression network

sample Hb_009178_010 Hb_009178_010 Hb_004718_060 Hb_004718_060 Hb_009178_010--Hb_004718_060 Hb_000260_760 Hb_000260_760 Hb_009178_010--Hb_000260_760 Hb_002686_410 Hb_002686_410 Hb_009178_010--Hb_002686_410 Hb_000034_110 Hb_000034_110 Hb_009178_010--Hb_000034_110 Hb_000030_140 Hb_000030_140 Hb_009178_010--Hb_000030_140 Hb_000956_040 Hb_000956_040 Hb_009178_010--Hb_000956_040 Hb_004718_060--Hb_000956_040 Hb_005873_020 Hb_005873_020 Hb_004718_060--Hb_005873_020 Hb_000172_360 Hb_000172_360 Hb_004718_060--Hb_000172_360 Hb_005305_100 Hb_005305_100 Hb_004718_060--Hb_005305_100 Hb_004718_060--Hb_000260_760 Hb_000260_760--Hb_000030_140 Hb_002461_020 Hb_002461_020 Hb_000260_760--Hb_002461_020 Hb_000428_030 Hb_000428_030 Hb_000260_760--Hb_000428_030 Hb_000996_020 Hb_000996_020 Hb_000260_760--Hb_000996_020 Hb_170077_010 Hb_170077_010 Hb_000260_760--Hb_170077_010 Hb_005885_030 Hb_005885_030 Hb_002686_410--Hb_005885_030 Hb_000270_700 Hb_000270_700 Hb_002686_410--Hb_000270_700 Hb_002686_410--Hb_000034_110 Hb_009158_060 Hb_009158_060 Hb_002686_410--Hb_009158_060 Hb_002686_410--Hb_000030_140 Hb_000034_110--Hb_000270_700 Hb_000034_110--Hb_000956_040 Hb_000034_110--Hb_000260_760 Hb_005403_010 Hb_005403_010 Hb_000034_110--Hb_005403_010 Hb_000030_140--Hb_002461_020 Hb_000030_140--Hb_000996_020 Hb_000035_100 Hb_000035_100 Hb_000030_140--Hb_000035_100 Hb_005333_140 Hb_005333_140 Hb_000030_140--Hb_005333_140 Hb_000110_350 Hb_000110_350 Hb_000030_140--Hb_000110_350 Hb_000956_040--Hb_005305_100 Hb_033152_090 Hb_033152_090 Hb_000956_040--Hb_033152_090 Hb_001009_120 Hb_001009_120 Hb_000956_040--Hb_001009_120 Hb_010287_020 Hb_010287_020 Hb_000956_040--Hb_010287_020 Hb_004774_090 Hb_004774_090 Hb_000956_040--Hb_004774_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.94979 11.3958 14.4558 7.16668 5.3248 4.84793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.47126 2.93351 2.32367 6.8458 8.23111

CAGE analysis