Hb_005885_030

Information

Type desease resistance
Description Gene Name: TIR
Location Contig5885: 54468-60145
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09760g
description hypothetical protein
nr
ID XP_012076887.1
description PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID U5FEN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09760g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50051: 53910-54586 , PASA_asmbl_50052: 55558-55713 , PASA_asmbl_50056: 57192-57768 , PASA_asmbl_50057: 57821-58200 , PASA_asmbl_50058: 58207-58768 , PASA_asmbl_50059: 58813-60074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005885_030 0.0 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
2 Hb_010775_010 0.0531254426 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
3 Hb_002686_410 0.0633392299 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
4 Hb_000270_700 0.0672452585 - - PREDICTED: protease Do-like 9 [Populus euphratica]
5 Hb_002248_120 0.0682093351 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
6 Hb_006794_020 0.06988831 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
7 Hb_001133_090 0.0713637816 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
8 Hb_013358_060 0.0715095335 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
9 Hb_000030_140 0.0734180364 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
10 Hb_000418_050 0.074453551 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
11 Hb_000260_760 0.0838080712 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
12 Hb_001911_010 0.085063849 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
13 Hb_000034_110 0.0854355904 - - sentrin/sumo-specific protease, putative [Ricinus communis]
14 Hb_000421_110 0.086001715 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
15 Hb_005403_010 0.0869559891 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
16 Hb_001414_010 0.0886552767 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
17 Hb_000331_100 0.0907715779 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
18 Hb_000008_280 0.0931970585 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
19 Hb_009178_010 0.0937469015 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
20 Hb_008165_020 0.0938411947 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005885_030 Hb_005885_030 Hb_010775_010 Hb_010775_010 Hb_005885_030--Hb_010775_010 Hb_002686_410 Hb_002686_410 Hb_005885_030--Hb_002686_410 Hb_000270_700 Hb_000270_700 Hb_005885_030--Hb_000270_700 Hb_002248_120 Hb_002248_120 Hb_005885_030--Hb_002248_120 Hb_006794_020 Hb_006794_020 Hb_005885_030--Hb_006794_020 Hb_001133_090 Hb_001133_090 Hb_005885_030--Hb_001133_090 Hb_013358_060 Hb_013358_060 Hb_010775_010--Hb_013358_060 Hb_010775_010--Hb_006794_020 Hb_010775_010--Hb_001133_090 Hb_001488_210 Hb_001488_210 Hb_010775_010--Hb_001488_210 Hb_010775_010--Hb_002686_410 Hb_009178_010 Hb_009178_010 Hb_002686_410--Hb_009178_010 Hb_002686_410--Hb_000270_700 Hb_000034_110 Hb_000034_110 Hb_002686_410--Hb_000034_110 Hb_009158_060 Hb_009158_060 Hb_002686_410--Hb_009158_060 Hb_000030_140 Hb_000030_140 Hb_002686_410--Hb_000030_140 Hb_000270_700--Hb_000034_110 Hb_000418_050 Hb_000418_050 Hb_000270_700--Hb_000418_050 Hb_003725_010 Hb_003725_010 Hb_000270_700--Hb_003725_010 Hb_000421_110 Hb_000421_110 Hb_000270_700--Hb_000421_110 Hb_001911_010 Hb_001911_010 Hb_002248_120--Hb_001911_010 Hb_013405_180 Hb_013405_180 Hb_002248_120--Hb_013405_180 Hb_002248_120--Hb_013358_060 Hb_002387_040 Hb_002387_040 Hb_002248_120--Hb_002387_040 Hb_004696_070 Hb_004696_070 Hb_002248_120--Hb_004696_070 Hb_006794_020--Hb_013358_060 Hb_143629_020 Hb_143629_020 Hb_006794_020--Hb_143629_020 Hb_000331_100 Hb_000331_100 Hb_006794_020--Hb_000331_100 Hb_006794_020--Hb_000270_700 Hb_001133_090--Hb_000421_110 Hb_001133_090--Hb_000418_050 Hb_007031_040 Hb_007031_040 Hb_001133_090--Hb_007031_040 Hb_001133_090--Hb_000270_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.10684 7.45091 5.96918 4.22636 2.23339 1.57966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.20088 0.899164 1.2148 3.52248 5.02848

CAGE analysis