Hb_013358_060

Information

Type -
Description -
Location Contig13358: 56861-66062
Sequence    

Annotation

kegg
ID rcu:RCOM_0921600
description nucleic acid binding protein, putative
nr
ID XP_012076441.1
description PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
swissprot
ID Q5U241
description Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2
trembl
ID A0A067KNY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07095 PE=4 SV=1
Gene Ontology
ID GO:0044444
description nucleic acid binding isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09502: 56992-66198 , PASA_asmbl_09505: 57374-57586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013358_060 0.0 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
2 Hb_003725_010 0.0655491985 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
3 Hb_006794_020 0.0675421503 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
4 Hb_002078_470 0.0680392074 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
5 Hb_000331_100 0.0689181361 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
6 Hb_000428_030 0.0692205344 - - hypothetical protein RCOM_1520720 [Ricinus communis]
7 Hb_000035_100 0.0709045166 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_005885_030 0.0715095335 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
9 Hb_000030_140 0.0715348178 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
10 Hb_008165_020 0.0716095549 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
11 Hb_010775_010 0.0748264168 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
12 Hb_143629_020 0.0762737866 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
13 Hb_000270_700 0.0785189818 - - PREDICTED: protease Do-like 9 [Populus euphratica]
14 Hb_004551_020 0.078961666 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
15 Hb_002248_120 0.0801545228 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
16 Hb_000260_760 0.0815860393 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
17 Hb_000665_260 0.0834300386 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
18 Hb_000172_360 0.0835992056 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
19 Hb_005305_100 0.0861151153 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
20 Hb_000404_030 0.0892424384 - - PREDICTED: protein NAP1 [Jatropha curcas]

Gene co-expression network

sample Hb_013358_060 Hb_013358_060 Hb_003725_010 Hb_003725_010 Hb_013358_060--Hb_003725_010 Hb_006794_020 Hb_006794_020 Hb_013358_060--Hb_006794_020 Hb_002078_470 Hb_002078_470 Hb_013358_060--Hb_002078_470 Hb_000331_100 Hb_000331_100 Hb_013358_060--Hb_000331_100 Hb_000428_030 Hb_000428_030 Hb_013358_060--Hb_000428_030 Hb_000035_100 Hb_000035_100 Hb_013358_060--Hb_000035_100 Hb_000270_700 Hb_000270_700 Hb_003725_010--Hb_000270_700 Hb_024714_070 Hb_024714_070 Hb_003725_010--Hb_024714_070 Hb_012799_150 Hb_012799_150 Hb_003725_010--Hb_012799_150 Hb_000015_090 Hb_000015_090 Hb_003725_010--Hb_000015_090 Hb_017914_010 Hb_017914_010 Hb_003725_010--Hb_017914_010 Hb_143629_020 Hb_143629_020 Hb_006794_020--Hb_143629_020 Hb_005885_030 Hb_005885_030 Hb_006794_020--Hb_005885_030 Hb_010775_010 Hb_010775_010 Hb_006794_020--Hb_010775_010 Hb_006794_020--Hb_000331_100 Hb_006794_020--Hb_000270_700 Hb_002078_470--Hb_000428_030 Hb_003124_270 Hb_003124_270 Hb_002078_470--Hb_003124_270 Hb_004551_020 Hb_004551_020 Hb_002078_470--Hb_004551_020 Hb_002078_470--Hb_143629_020 Hb_004586_090 Hb_004586_090 Hb_002078_470--Hb_004586_090 Hb_008165_020 Hb_008165_020 Hb_000331_100--Hb_008165_020 Hb_000331_100--Hb_000428_030 Hb_000331_100--Hb_000035_100 Hb_003964_110 Hb_003964_110 Hb_000331_100--Hb_003964_110 Hb_009476_120 Hb_009476_120 Hb_000331_100--Hb_009476_120 Hb_000260_760 Hb_000260_760 Hb_000428_030--Hb_000260_760 Hb_000428_030--Hb_008165_020 Hb_000428_030--Hb_004551_020 Hb_000200_110 Hb_000200_110 Hb_000428_030--Hb_000200_110 Hb_116349_130 Hb_116349_130 Hb_000035_100--Hb_116349_130 Hb_033312_130 Hb_033312_130 Hb_000035_100--Hb_033312_130 Hb_000030_140 Hb_000030_140 Hb_000035_100--Hb_000030_140 Hb_000035_100--Hb_008165_020 Hb_000173_190 Hb_000173_190 Hb_000035_100--Hb_000173_190 Hb_003929_210 Hb_003929_210 Hb_000035_100--Hb_003929_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9981 48.5488 33.9715 23.0087 11.1928 11.0792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.91886 10.1403 8.73222 27.906 33.4447

CAGE analysis