Hb_017914_010

Information

Type transcription factor
Description TF Family: C2H2
Location Contig17914: 3802-13234
Sequence    

Annotation

kegg
ID cic:CICLE_v10015448mg
description hypothetical protein
nr
ID XP_012088566.1
description PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
swissprot
ID Q9C5G0
description Protein SUPPRESSOR OF FRI 4 OS=Arabidopsis thaliana GN=SUF4 PE=1 SV=1
trembl
ID A0A067JJ49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27102 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein suppressor of fri 4-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17325: 3839-13113 , PASA_asmbl_17326: 11272-13113
cDNA
(Sanger)
(ID:Location)		 037_A16.ab1: 3841-11250 , 037_I23.ab1: 3841-11248

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017914_010 0.0 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
2 Hb_024714_070 0.0798661305 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
3 Hb_003417_030 0.0814295038 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
4 Hb_003725_010 0.0854869151 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
5 Hb_013358_060 0.0909845217 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
6 Hb_000270_700 0.1020854612 - - PREDICTED: protease Do-like 9 [Populus euphratica]
7 Hb_010775_010 0.1063858496 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
8 Hb_003216_060 0.1074600327 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
9 Hb_006794_020 0.1120082931 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
10 Hb_002804_010 0.1127089594 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
11 Hb_083078_010 0.112880835 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
12 Hb_002107_100 0.1131538059 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
13 Hb_004117_270 0.1132775073 - - -
14 Hb_002387_040 0.1137732684 - - protein transporter, putative [Ricinus communis]
15 Hb_012799_150 0.1141300034 - - PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 13 [Jatropha curcas]
16 Hb_000418_050 0.115462298 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
17 Hb_005288_050 0.1172479188 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
18 Hb_000796_120 0.1181189963 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
19 Hb_000613_220 0.1200771217 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
20 Hb_004800_130 0.120790016 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]

Gene co-expression network

sample Hb_017914_010 Hb_017914_010 Hb_024714_070 Hb_024714_070 Hb_017914_010--Hb_024714_070 Hb_003417_030 Hb_003417_030 Hb_017914_010--Hb_003417_030 Hb_003725_010 Hb_003725_010 Hb_017914_010--Hb_003725_010 Hb_013358_060 Hb_013358_060 Hb_017914_010--Hb_013358_060 Hb_000270_700 Hb_000270_700 Hb_017914_010--Hb_000270_700 Hb_010775_010 Hb_010775_010 Hb_017914_010--Hb_010775_010 Hb_024714_070--Hb_003725_010 Hb_002387_040 Hb_002387_040 Hb_024714_070--Hb_002387_040 Hb_024714_070--Hb_003417_030 Hb_000015_090 Hb_000015_090 Hb_024714_070--Hb_000015_090 Hb_024714_070--Hb_013358_060 Hb_003417_030--Hb_003725_010 Hb_012799_150 Hb_012799_150 Hb_003417_030--Hb_012799_150 Hb_003428_090 Hb_003428_090 Hb_003417_030--Hb_003428_090 Hb_121089_020 Hb_121089_020 Hb_003417_030--Hb_121089_020 Hb_003725_010--Hb_013358_060 Hb_003725_010--Hb_000270_700 Hb_003725_010--Hb_012799_150 Hb_003725_010--Hb_000015_090 Hb_006794_020 Hb_006794_020 Hb_013358_060--Hb_006794_020 Hb_002078_470 Hb_002078_470 Hb_013358_060--Hb_002078_470 Hb_000331_100 Hb_000331_100 Hb_013358_060--Hb_000331_100 Hb_000428_030 Hb_000428_030 Hb_013358_060--Hb_000428_030 Hb_000035_100 Hb_000035_100 Hb_013358_060--Hb_000035_100 Hb_000034_110 Hb_000034_110 Hb_000270_700--Hb_000034_110 Hb_000418_050 Hb_000418_050 Hb_000270_700--Hb_000418_050 Hb_002686_410 Hb_002686_410 Hb_000270_700--Hb_002686_410 Hb_005885_030 Hb_005885_030 Hb_000270_700--Hb_005885_030 Hb_000421_110 Hb_000421_110 Hb_000270_700--Hb_000421_110 Hb_010775_010--Hb_005885_030 Hb_010775_010--Hb_013358_060 Hb_010775_010--Hb_006794_020 Hb_001133_090 Hb_001133_090 Hb_010775_010--Hb_001133_090 Hb_001488_210 Hb_001488_210 Hb_010775_010--Hb_001488_210 Hb_010775_010--Hb_002686_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.08587 22.2219 18.5092 8.60839 4.99806 2.49491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.77145 5.34504 2.44035 14.2177 13.4093

CAGE analysis