Hb_121089_020

Information

Type -
Description -
Location Contig121089: 25938-29990
Sequence    

Annotation

kegg
ID pop:POPTR_0001s10700g
description POPTRDRAFT_815032; UDP-glucose 4-epimerase family protein
nr
ID XP_012086709.1
description PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
swissprot
ID Q9SN58
description UDP-glucose 4-epimerase 5 OS=Arabidopsis thaliana GN=UGE5 PE=1 SV=3
trembl
ID A0A067JR64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20444 PE=3 SV=1
Gene Ontology
ID GO:0003978
description udp-glucose 4-epimerase gepi48

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06490: 26002-29989 , PASA_asmbl_06491: 28407-28741 , PASA_asmbl_06493: 28783-28884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121089_020 0.0 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
2 Hb_002900_120 0.0973008068 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
3 Hb_024714_070 0.0986618043 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
4 Hb_000015_090 0.1037091699 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
5 Hb_007416_260 0.1119128979 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
6 Hb_000711_010 0.1201259775 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
7 Hb_002804_010 0.1208479283 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
8 Hb_003417_030 0.1215857258 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
9 Hb_000979_140 0.1231853427 - - kinase family protein [Populus trichocarpa]
10 Hb_002387_040 0.1242510659 - - protein transporter, putative [Ricinus communis]
11 Hb_001054_070 0.1252718663 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
12 Hb_003725_010 0.1265341972 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
13 Hb_002876_210 0.1269332259 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
14 Hb_005332_140 0.1273915147 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X2 [Jatropha curcas]
15 Hb_002482_030 0.1297089406 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
16 Hb_000699_210 0.1317922892 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
17 Hb_004208_140 0.1321182985 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
18 Hb_017914_010 0.1337020965 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
19 Hb_124677_040 0.1338082771 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
20 Hb_004774_020 0.1348405999 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]

Gene co-expression network

sample Hb_121089_020 Hb_121089_020 Hb_002900_120 Hb_002900_120 Hb_121089_020--Hb_002900_120 Hb_024714_070 Hb_024714_070 Hb_121089_020--Hb_024714_070 Hb_000015_090 Hb_000015_090 Hb_121089_020--Hb_000015_090 Hb_007416_260 Hb_007416_260 Hb_121089_020--Hb_007416_260 Hb_000711_010 Hb_000711_010 Hb_121089_020--Hb_000711_010 Hb_002804_010 Hb_002804_010 Hb_121089_020--Hb_002804_010 Hb_002965_050 Hb_002965_050 Hb_002900_120--Hb_002965_050 Hb_002876_210 Hb_002876_210 Hb_002900_120--Hb_002876_210 Hb_000156_090 Hb_000156_090 Hb_002900_120--Hb_000156_090 Hb_002900_120--Hb_000711_010 Hb_003581_280 Hb_003581_280 Hb_002900_120--Hb_003581_280 Hb_004774_020 Hb_004774_020 Hb_002900_120--Hb_004774_020 Hb_003725_010 Hb_003725_010 Hb_024714_070--Hb_003725_010 Hb_017914_010 Hb_017914_010 Hb_024714_070--Hb_017914_010 Hb_002387_040 Hb_002387_040 Hb_024714_070--Hb_002387_040 Hb_003417_030 Hb_003417_030 Hb_024714_070--Hb_003417_030 Hb_024714_070--Hb_000015_090 Hb_013358_060 Hb_013358_060 Hb_024714_070--Hb_013358_060 Hb_000452_030 Hb_000452_030 Hb_000015_090--Hb_000452_030 Hb_000664_090 Hb_000664_090 Hb_000015_090--Hb_000664_090 Hb_004375_110 Hb_004375_110 Hb_000015_090--Hb_004375_110 Hb_000015_090--Hb_003725_010 Hb_000015_200 Hb_000015_200 Hb_000015_090--Hb_000015_200 Hb_000979_140 Hb_000979_140 Hb_000015_090--Hb_000979_140 Hb_000815_310 Hb_000815_310 Hb_007416_260--Hb_000815_310 Hb_007416_260--Hb_002965_050 Hb_000261_280 Hb_000261_280 Hb_007416_260--Hb_000261_280 Hb_007416_260--Hb_000979_140 Hb_000137_010 Hb_000137_010 Hb_007416_260--Hb_000137_010 Hb_007416_260--Hb_002876_210 Hb_002349_030 Hb_002349_030 Hb_000711_010--Hb_002349_030 Hb_000711_010--Hb_002965_050 Hb_000711_010--Hb_002876_210 Hb_000012_240 Hb_000012_240 Hb_000711_010--Hb_000012_240 Hb_060094_010 Hb_060094_010 Hb_000711_010--Hb_060094_010 Hb_005288_050 Hb_005288_050 Hb_002804_010--Hb_005288_050 Hb_002804_010--Hb_002387_040 Hb_000418_050 Hb_000418_050 Hb_002804_010--Hb_000418_050 Hb_002804_010--Hb_024714_070 Hb_000753_140 Hb_000753_140 Hb_002804_010--Hb_000753_140 Hb_001951_240 Hb_001951_240 Hb_002804_010--Hb_001951_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.76057 54.7345 35.8341 29.0384 7.95789 4.53408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.03902 17.7405 7.21561 16.2472 33.3891

CAGE analysis