Hb_004774_020

Information

Type -
Description -
Location Contig4774: 32656-33327
Sequence    

Annotation

kegg
ID eus:EUTSA_v10017219mg
description hypothetical protein
nr
ID XP_010517128.1
description PREDICTED: PRA1 family protein B4-like [Camelina sativa]
swissprot
ID O80915
description PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1
trembl
ID V4MBL2
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017219mg PE=4 SV=1
Gene Ontology
ID GO:0005783
description pra1 family protein b4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004774_020 0.0 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
2 Hb_003925_040 0.08650801 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
3 Hb_002042_170 0.0894068864 - - RING/U-box superfamily protein [Theobroma cacao]
4 Hb_002900_120 0.0911747522 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
5 Hb_001439_230 0.0918661714 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
6 Hb_124677_040 0.1002000361 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
7 Hb_000699_210 0.1012373689 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
8 Hb_004108_240 0.1033047295 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
9 Hb_000156_090 0.1075052437 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
10 Hb_003147_060 0.1092975083 - - syntaxin, plant, putative [Ricinus communis]
11 Hb_002876_210 0.1104581571 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
12 Hb_000638_280 0.112297185 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
13 Hb_002965_050 0.1131603061 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
14 Hb_006970_050 0.113718246 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
15 Hb_004208_140 0.1140538503 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
16 Hb_003411_030 0.1168058885 - - hypothetical protein POPTR_0010s13590g [Populus trichocarpa]
17 Hb_002217_090 0.1245707654 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
18 Hb_000711_010 0.1251568816 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
19 Hb_002774_200 0.1265856685 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
20 Hb_010287_020 0.1266264827 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_004774_020 Hb_004774_020 Hb_003925_040 Hb_003925_040 Hb_004774_020--Hb_003925_040 Hb_002042_170 Hb_002042_170 Hb_004774_020--Hb_002042_170 Hb_002900_120 Hb_002900_120 Hb_004774_020--Hb_002900_120 Hb_001439_230 Hb_001439_230 Hb_004774_020--Hb_001439_230 Hb_124677_040 Hb_124677_040 Hb_004774_020--Hb_124677_040 Hb_000699_210 Hb_000699_210 Hb_004774_020--Hb_000699_210 Hb_003147_060 Hb_003147_060 Hb_003925_040--Hb_003147_060 Hb_084490_010 Hb_084490_010 Hb_003925_040--Hb_084490_010 Hb_009545_090 Hb_009545_090 Hb_003925_040--Hb_009545_090 Hb_004108_240 Hb_004108_240 Hb_003925_040--Hb_004108_240 Hb_003925_040--Hb_002042_170 Hb_000156_090 Hb_000156_090 Hb_002042_170--Hb_000156_090 Hb_010872_070 Hb_010872_070 Hb_002042_170--Hb_010872_070 Hb_000656_390 Hb_000656_390 Hb_002042_170--Hb_000656_390 Hb_171900_020 Hb_171900_020 Hb_002042_170--Hb_171900_020 Hb_002965_050 Hb_002965_050 Hb_002900_120--Hb_002965_050 Hb_002876_210 Hb_002876_210 Hb_002900_120--Hb_002876_210 Hb_002900_120--Hb_000156_090 Hb_000711_010 Hb_000711_010 Hb_002900_120--Hb_000711_010 Hb_003581_280 Hb_003581_280 Hb_002900_120--Hb_003581_280 Hb_002301_170 Hb_002301_170 Hb_001439_230--Hb_002301_170 Hb_000000_230 Hb_000000_230 Hb_001439_230--Hb_000000_230 Hb_006970_050 Hb_006970_050 Hb_001439_230--Hb_006970_050 Hb_000086_420 Hb_000086_420 Hb_001439_230--Hb_000086_420 Hb_000490_060 Hb_000490_060 Hb_001439_230--Hb_000490_060 Hb_124677_040--Hb_004108_240 Hb_124677_040--Hb_003581_280 Hb_124677_040--Hb_002900_120 Hb_124677_040--Hb_003925_040 Hb_000925_030 Hb_000925_030 Hb_124677_040--Hb_000925_030 Hb_001488_040 Hb_001488_040 Hb_000699_210--Hb_001488_040 Hb_009486_160 Hb_009486_160 Hb_000699_210--Hb_009486_160 Hb_002387_040 Hb_002387_040 Hb_000699_210--Hb_002387_040 Hb_000638_280 Hb_000638_280 Hb_000699_210--Hb_000638_280 Hb_002897_050 Hb_002897_050 Hb_000699_210--Hb_002897_050 Hb_000796_120 Hb_000796_120 Hb_000699_210--Hb_000796_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1751 112.59 63.8074 54.4159 15.3925 17.7298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0478 52.2614 28.3439 29.5941 41.4737

CAGE analysis