Hb_002387_040

Information

Type -
Description -
Location Contig2387: 37801-46879
Sequence    

Annotation

kegg
ID rcu:RCOM_0560040
description protein transporter, putative
nr
ID XP_002520270.1
description protein transporter, putative [Ricinus communis]
swissprot
ID Q68FJ8
description TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1
trembl
ID B9S2Q1
description Protein transporter, putative OS=Ricinus communis GN=RCOM_0560040 PE=4 SV=1
Gene Ontology
ID GO:0005622
description target of myb protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25005: 37830-46654 , PASA_asmbl_25006: 43794-46305 , PASA_asmbl_25007: 39058-39384 , PASA_asmbl_25008: 46535-46676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002387_040 0.0 - - protein transporter, putative [Ricinus communis]
2 Hb_002248_120 0.0812860255 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
3 Hb_000699_210 0.0824705143 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
4 Hb_024714_070 0.0869924338 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
5 Hb_000418_050 0.0893150271 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
6 Hb_005288_050 0.0898467163 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
7 Hb_002804_010 0.0903150809 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
8 Hb_013358_060 0.0903313048 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
9 Hb_000421_110 0.0905973038 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
10 Hb_002965_050 0.0920068012 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
11 Hb_003725_010 0.092390737 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
12 Hb_002154_020 0.0932359223 - - protein with unknown function [Ricinus communis]
13 Hb_009372_020 0.093236947 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
14 Hb_000270_700 0.0932618082 - - PREDICTED: protease Do-like 9 [Populus euphratica]
15 Hb_002900_120 0.0945598961 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
16 Hb_033363_010 0.0960047655 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
17 Hb_159295_010 0.0963069097 - - hypothetical protein RCOM_1520720 [Ricinus communis]
18 Hb_000156_090 0.0971591693 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
19 Hb_000069_780 0.1000489688 - - atpob1, putative [Ricinus communis]
20 Hb_002249_050 0.1002925387 - - Auxin response factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002387_040 Hb_002387_040 Hb_002248_120 Hb_002248_120 Hb_002387_040--Hb_002248_120 Hb_000699_210 Hb_000699_210 Hb_002387_040--Hb_000699_210 Hb_024714_070 Hb_024714_070 Hb_002387_040--Hb_024714_070 Hb_000418_050 Hb_000418_050 Hb_002387_040--Hb_000418_050 Hb_005288_050 Hb_005288_050 Hb_002387_040--Hb_005288_050 Hb_002804_010 Hb_002804_010 Hb_002387_040--Hb_002804_010 Hb_005885_030 Hb_005885_030 Hb_002248_120--Hb_005885_030 Hb_001911_010 Hb_001911_010 Hb_002248_120--Hb_001911_010 Hb_013405_180 Hb_013405_180 Hb_002248_120--Hb_013405_180 Hb_013358_060 Hb_013358_060 Hb_002248_120--Hb_013358_060 Hb_004696_070 Hb_004696_070 Hb_002248_120--Hb_004696_070 Hb_001488_040 Hb_001488_040 Hb_000699_210--Hb_001488_040 Hb_009486_160 Hb_009486_160 Hb_000699_210--Hb_009486_160 Hb_000638_280 Hb_000638_280 Hb_000699_210--Hb_000638_280 Hb_002897_050 Hb_002897_050 Hb_000699_210--Hb_002897_050 Hb_000796_120 Hb_000796_120 Hb_000699_210--Hb_000796_120 Hb_003725_010 Hb_003725_010 Hb_024714_070--Hb_003725_010 Hb_017914_010 Hb_017914_010 Hb_024714_070--Hb_017914_010 Hb_003417_030 Hb_003417_030 Hb_024714_070--Hb_003417_030 Hb_000015_090 Hb_000015_090 Hb_024714_070--Hb_000015_090 Hb_024714_070--Hb_013358_060 Hb_000270_700 Hb_000270_700 Hb_000418_050--Hb_000270_700 Hb_001133_090 Hb_001133_090 Hb_000418_050--Hb_001133_090 Hb_000421_110 Hb_000421_110 Hb_000418_050--Hb_000421_110 Hb_000418_050--Hb_005885_030 Hb_000261_280 Hb_000261_280 Hb_000418_050--Hb_000261_280 Hb_002107_100 Hb_002107_100 Hb_000418_050--Hb_002107_100 Hb_005288_050--Hb_002804_010 Hb_006794_020 Hb_006794_020 Hb_005288_050--Hb_006794_020 Hb_000227_320 Hb_000227_320 Hb_005288_050--Hb_000227_320 Hb_033363_010 Hb_033363_010 Hb_005288_050--Hb_033363_010 Hb_005288_050--Hb_000270_700 Hb_002804_010--Hb_000418_050 Hb_002804_010--Hb_024714_070 Hb_000753_140 Hb_000753_140 Hb_002804_010--Hb_000753_140 Hb_001951_240 Hb_001951_240 Hb_002804_010--Hb_001951_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.0496 67.6387 38.4179 31.9174 9.26717 9.93414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.26495 10.9441 10.7086 27.2145 26.4423

CAGE analysis