Hb_000418_050

Information

Type -
Description -
Location Contig418: 70672-76133
Sequence    

Annotation

kegg
ID pop:POPTR_0010s12580g
description POPTRDRAFT_566526; hypothetical protein
nr
ID XP_012075676.1
description PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09265 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41313: 73027-75869 , PASA_asmbl_41314: 73345-75869 , PASA_asmbl_41316: 70674-75976 , PASA_asmbl_41317: 73895-74133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_050 0.0 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
2 Hb_000270_700 0.0586935068 - - PREDICTED: protease Do-like 9 [Populus euphratica]
3 Hb_001133_090 0.064890977 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
4 Hb_000421_110 0.0678585073 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
5 Hb_005885_030 0.074453551 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
6 Hb_000261_280 0.0770274344 - - BnaA10g23810D [Brassica napus]
7 Hb_002107_100 0.0805029809 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
8 Hb_000796_120 0.0814759032 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
9 Hb_002686_410 0.0822010767 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
10 Hb_010775_010 0.0832252023 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
11 Hb_000815_310 0.0860045092 - - protein kinase, putative [Ricinus communis]
12 Hb_001009_120 0.0890785396 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
13 Hb_002387_040 0.0893150271 - - protein transporter, putative [Ricinus communis]
14 Hb_000956_040 0.090033908 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
15 Hb_000034_110 0.0903131793 - - sentrin/sumo-specific protease, putative [Ricinus communis]
16 Hb_003018_030 0.0903597707 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
17 Hb_002248_120 0.0929849299 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
18 Hb_003177_070 0.0935367968 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
19 Hb_003777_130 0.0943819351 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
20 Hb_002965_050 0.0966110322 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]

Gene co-expression network

sample Hb_000418_050 Hb_000418_050 Hb_000270_700 Hb_000270_700 Hb_000418_050--Hb_000270_700 Hb_001133_090 Hb_001133_090 Hb_000418_050--Hb_001133_090 Hb_000421_110 Hb_000421_110 Hb_000418_050--Hb_000421_110 Hb_005885_030 Hb_005885_030 Hb_000418_050--Hb_005885_030 Hb_000261_280 Hb_000261_280 Hb_000418_050--Hb_000261_280 Hb_002107_100 Hb_002107_100 Hb_000418_050--Hb_002107_100 Hb_000034_110 Hb_000034_110 Hb_000270_700--Hb_000034_110 Hb_002686_410 Hb_002686_410 Hb_000270_700--Hb_002686_410 Hb_000270_700--Hb_005885_030 Hb_003725_010 Hb_003725_010 Hb_000270_700--Hb_003725_010 Hb_000270_700--Hb_000421_110 Hb_001133_090--Hb_000421_110 Hb_007031_040 Hb_007031_040 Hb_001133_090--Hb_007031_040 Hb_001133_090--Hb_005885_030 Hb_001133_090--Hb_000270_700 Hb_010775_010 Hb_010775_010 Hb_001133_090--Hb_010775_010 Hb_000421_110--Hb_007031_040 Hb_001911_010 Hb_001911_010 Hb_000421_110--Hb_001911_010 Hb_004319_050 Hb_004319_050 Hb_000421_110--Hb_004319_050 Hb_005885_030--Hb_010775_010 Hb_005885_030--Hb_002686_410 Hb_002248_120 Hb_002248_120 Hb_005885_030--Hb_002248_120 Hb_006794_020 Hb_006794_020 Hb_005885_030--Hb_006794_020 Hb_000803_180 Hb_000803_180 Hb_000261_280--Hb_000803_180 Hb_003777_130 Hb_003777_130 Hb_000261_280--Hb_003777_130 Hb_000796_120 Hb_000796_120 Hb_000261_280--Hb_000796_120 Hb_033152_090 Hb_033152_090 Hb_000261_280--Hb_033152_090 Hb_000261_280--Hb_004319_050 Hb_002107_100--Hb_000796_120 Hb_002107_100--Hb_000270_700 Hb_104920_010 Hb_104920_010 Hb_002107_100--Hb_104920_010 Hb_002107_100--Hb_000034_110 Hb_003428_090 Hb_003428_090 Hb_002107_100--Hb_003428_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3387 58.6059 54.8401 33.7311 13.8455 10.2614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8533 8.33041 8.81279 23.6803 28.4256

CAGE analysis