Hb_004319_050

Information

Type -
Description -
Location Contig4319: 44775-45524
Sequence    

Annotation

kegg
ID pop:POPTR_0019s00960g
description POPTRDRAFT_665182; hypothetical protein
nr
ID XP_011001272.1
description PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
swissprot
ID Q4F883
description Senescence-associated carboxylesterase 101 OS=Arabidopsis thaliana GN=SAG101 PE=1 SV=1
trembl
ID B9INY2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s00960g PE=4 SV=2
Gene Ontology
ID GO:0016787
description senescence-associated gene isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42285: 44512-57020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004319_050 0.0 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
2 Hb_005288_140 0.0520882091 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
3 Hb_004526_010 0.0607698342 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
4 Hb_000796_120 0.0627204864 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
5 Hb_002903_140 0.0683159172 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
6 Hb_152910_010 0.072195068 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
7 Hb_011249_060 0.0737627545 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
8 Hb_030545_030 0.0768528218 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
9 Hb_000866_450 0.0773850609 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_000421_110 0.077683699 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
11 Hb_005403_010 0.0780617989 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
12 Hb_000189_630 0.080706437 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
13 Hb_000174_150 0.0811231806 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
14 Hb_003018_030 0.0812415059 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
15 Hb_001009_120 0.0812953506 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
16 Hb_000640_190 0.0813882091 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
17 Hb_000260_770 0.0821638476 - - er lumen protein retaining receptor, putative [Ricinus communis]
18 Hb_001259_110 0.0823545744 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
19 Hb_010287_020 0.0830251954 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
20 Hb_000048_080 0.0831912759 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004319_050 Hb_004319_050 Hb_005288_140 Hb_005288_140 Hb_004319_050--Hb_005288_140 Hb_004526_010 Hb_004526_010 Hb_004319_050--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_004319_050--Hb_000796_120 Hb_002903_140 Hb_002903_140 Hb_004319_050--Hb_002903_140 Hb_152910_010 Hb_152910_010 Hb_004319_050--Hb_152910_010 Hb_011249_060 Hb_011249_060 Hb_004319_050--Hb_011249_060 Hb_000866_450 Hb_000866_450 Hb_005288_140--Hb_000866_450 Hb_026198_060 Hb_026198_060 Hb_005288_140--Hb_026198_060 Hb_000174_150 Hb_000174_150 Hb_005288_140--Hb_000174_150 Hb_005403_010 Hb_005403_010 Hb_005288_140--Hb_005403_010 Hb_033152_090 Hb_033152_090 Hb_005288_140--Hb_033152_090 Hb_004526_010--Hb_000796_120 Hb_030545_030 Hb_030545_030 Hb_004526_010--Hb_030545_030 Hb_003992_180 Hb_003992_180 Hb_004526_010--Hb_003992_180 Hb_009486_160 Hb_009486_160 Hb_004526_010--Hb_009486_160 Hb_159295_010 Hb_159295_010 Hb_004526_010--Hb_159295_010 Hb_002107_100 Hb_002107_100 Hb_000796_120--Hb_002107_100 Hb_000418_050 Hb_000418_050 Hb_000796_120--Hb_000418_050 Hb_000261_280 Hb_000261_280 Hb_000796_120--Hb_000261_280 Hb_009178_010 Hb_009178_010 Hb_000796_120--Hb_009178_010 Hb_002903_140--Hb_030545_030 Hb_008165_030 Hb_008165_030 Hb_002903_140--Hb_008165_030 Hb_000977_300 Hb_000977_300 Hb_002903_140--Hb_000977_300 Hb_007017_070 Hb_007017_070 Hb_002903_140--Hb_007017_070 Hb_096819_010 Hb_096819_010 Hb_002903_140--Hb_096819_010 Hb_172257_010 Hb_172257_010 Hb_152910_010--Hb_172257_010 Hb_152910_010--Hb_030545_030 Hb_000302_170 Hb_000302_170 Hb_152910_010--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_152910_010--Hb_000300_550 Hb_000640_190 Hb_000640_190 Hb_152910_010--Hb_000640_190 Hb_001427_150 Hb_001427_150 Hb_011249_060--Hb_001427_150 Hb_009302_030 Hb_009302_030 Hb_011249_060--Hb_009302_030 Hb_004899_040 Hb_004899_040 Hb_011249_060--Hb_004899_040 Hb_011249_060--Hb_009486_160 Hb_011249_060--Hb_002903_140 Hb_015183_100 Hb_015183_100 Hb_011249_060--Hb_015183_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1741 64.8025 53.0633 33.1572 21.6689 16.7941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5404 13.423 13.0009 28.3331 23.9942

CAGE analysis