Hb_004526_010

Information

Type -
Description -
Location Contig4526: 13513-17794
Sequence    

Annotation

kegg
ID rcu:RCOM_0623540
description signal recognition particle receptor alpha subunit, putative
nr
ID XP_002529394.1
description signal recognition particle receptor alpha subunit, putative [Ricinus communis]
swissprot
ID Q9DBG7
description Signal recognition particle receptor subunit alpha OS=Mus musculus GN=Srpr PE=1 SV=1
trembl
ID B9STS5
description Signal recognition particle receptor alpha subunit, putative OS=Ricinus communis GN=RCOM_0623540 PE=4 SV=1
Gene Ontology
ID GO:0005785
description signal recognition particle receptor subunit alpha homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43238: 13549-18385 , PASA_asmbl_43239: 14783-18385 , PASA_asmbl_43240: 16238-16517
cDNA
(Sanger)
(ID:Location)		 039_A16.ab1: 17200-18335

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004526_010 0.0 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
2 Hb_004319_050 0.0607698342 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
3 Hb_000796_120 0.0723050592 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
4 Hb_030545_030 0.0727947871 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
5 Hb_003992_180 0.0803997939 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
6 Hb_009486_160 0.0821962211 - - PREDICTED: metacaspase-1 [Jatropha curcas]
7 Hb_159295_010 0.0831181356 - - hypothetical protein RCOM_1520720 [Ricinus communis]
8 Hb_152910_010 0.0831740332 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
9 Hb_011249_060 0.0833674967 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
10 Hb_002903_140 0.0836759336 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
11 Hb_001009_090 0.0836896621 - - CDK protein [Hevea brasiliensis]
12 Hb_004319_070 0.083707986 - - hypothetical protein RCOM_0852460 [Ricinus communis]
13 Hb_005834_040 0.0854346193 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
14 Hb_000421_110 0.0854549953 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
15 Hb_102438_030 0.0866986243 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
16 Hb_007017_070 0.0880034123 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
17 Hb_001009_120 0.0891289665 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
18 Hb_005288_140 0.0909902854 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
19 Hb_006615_030 0.0916604869 - - prolyl oligopeptidase family protein [Populus trichocarpa]
20 Hb_001245_050 0.0926385592 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]

Gene co-expression network

sample Hb_004526_010 Hb_004526_010 Hb_004319_050 Hb_004319_050 Hb_004526_010--Hb_004319_050 Hb_000796_120 Hb_000796_120 Hb_004526_010--Hb_000796_120 Hb_030545_030 Hb_030545_030 Hb_004526_010--Hb_030545_030 Hb_003992_180 Hb_003992_180 Hb_004526_010--Hb_003992_180 Hb_009486_160 Hb_009486_160 Hb_004526_010--Hb_009486_160 Hb_159295_010 Hb_159295_010 Hb_004526_010--Hb_159295_010 Hb_005288_140 Hb_005288_140 Hb_004319_050--Hb_005288_140 Hb_004319_050--Hb_000796_120 Hb_002903_140 Hb_002903_140 Hb_004319_050--Hb_002903_140 Hb_152910_010 Hb_152910_010 Hb_004319_050--Hb_152910_010 Hb_011249_060 Hb_011249_060 Hb_004319_050--Hb_011249_060 Hb_002107_100 Hb_002107_100 Hb_000796_120--Hb_002107_100 Hb_000418_050 Hb_000418_050 Hb_000796_120--Hb_000418_050 Hb_000261_280 Hb_000261_280 Hb_000796_120--Hb_000261_280 Hb_009178_010 Hb_009178_010 Hb_000796_120--Hb_009178_010 Hb_030545_030--Hb_002903_140 Hb_102438_030 Hb_102438_030 Hb_030545_030--Hb_102438_030 Hb_000227_310 Hb_000227_310 Hb_030545_030--Hb_000227_310 Hb_007017_070 Hb_007017_070 Hb_030545_030--Hb_007017_070 Hb_008165_030 Hb_008165_030 Hb_030545_030--Hb_008165_030 Hb_096819_010 Hb_096819_010 Hb_030545_030--Hb_096819_010 Hb_003992_180--Hb_030545_030 Hb_006615_030 Hb_006615_030 Hb_003992_180--Hb_006615_030 Hb_012305_140 Hb_012305_140 Hb_003992_180--Hb_012305_140 Hb_001558_060 Hb_001558_060 Hb_003992_180--Hb_001558_060 Hb_005694_130 Hb_005694_130 Hb_003992_180--Hb_005694_130 Hb_009486_160--Hb_011249_060 Hb_002812_010 Hb_002812_010 Hb_009486_160--Hb_002812_010 Hb_001862_110 Hb_001862_110 Hb_009486_160--Hb_001862_110 Hb_004319_070 Hb_004319_070 Hb_009486_160--Hb_004319_070 Hb_000363_120 Hb_000363_120 Hb_009486_160--Hb_000363_120 Hb_004899_040 Hb_004899_040 Hb_009486_160--Hb_004899_040 Hb_005765_040 Hb_005765_040 Hb_159295_010--Hb_005765_040 Hb_001911_010 Hb_001911_010 Hb_159295_010--Hb_001911_010 Hb_159295_010--Hb_002812_010 Hb_002249_050 Hb_002249_050 Hb_159295_010--Hb_002249_050 Hb_159295_010--Hb_011249_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.3427 120.972 91.9814 48.5134 38.8299 36.7377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.0268 23.8635 22.553 47.6999 35.4043

CAGE analysis