Hb_002812_010

Information

Type -
Description -
Location Contig2812: 54043-61503
Sequence    

Annotation

kegg
ID rcu:RCOM_1115620
description receptor protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012080618.1
description PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
swissprot
ID A8R7E6
description Chitin elicitor receptor kinase 1 OS=Arabidopsis thaliana GN=CERK1 PE=1 SV=1
trembl
ID B9SH40
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1115620 PE=3 SV=1
Gene Ontology
ID GO:0004672
description chitin elicitor receptor kinase 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29445: 54085-60780 , PASA_asmbl_29446: 60810-61319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002812_010 0.0 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
2 Hb_009486_160 0.0725312151 - - PREDICTED: metacaspase-1 [Jatropha curcas]
3 Hb_001257_100 0.0746867857 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
4 Hb_001862_110 0.0790910177 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
5 Hb_159295_010 0.0791637302 - - hypothetical protein RCOM_1520720 [Ricinus communis]
6 Hb_000926_150 0.081944267 - - PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
7 Hb_008948_140 0.0887231767 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
8 Hb_005765_040 0.0895363981 - - transcription elongation factor s-II, putative [Ricinus communis]
9 Hb_000856_300 0.0931735096 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
10 Hb_004526_010 0.09321239 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
11 Hb_011249_060 0.0950380627 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
12 Hb_000699_210 0.0957359511 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
13 Hb_000700_060 0.0958904281 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
14 Hb_001341_160 0.0963890057 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
15 Hb_001488_040 0.0980552742 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
16 Hb_000363_120 0.1006120774 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
17 Hb_116349_130 0.1025647569 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
18 Hb_000373_170 0.1033710549 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
19 Hb_007765_030 0.1035708803 - - PREDICTED: neutral ceramidase [Jatropha curcas]
20 Hb_002119_090 0.1042751435 - - PREDICTED: protein OBERON 3 [Jatropha curcas]

Gene co-expression network

sample Hb_002812_010 Hb_002812_010 Hb_009486_160 Hb_009486_160 Hb_002812_010--Hb_009486_160 Hb_001257_100 Hb_001257_100 Hb_002812_010--Hb_001257_100 Hb_001862_110 Hb_001862_110 Hb_002812_010--Hb_001862_110 Hb_159295_010 Hb_159295_010 Hb_002812_010--Hb_159295_010 Hb_000926_150 Hb_000926_150 Hb_002812_010--Hb_000926_150 Hb_008948_140 Hb_008948_140 Hb_002812_010--Hb_008948_140 Hb_011249_060 Hb_011249_060 Hb_009486_160--Hb_011249_060 Hb_009486_160--Hb_001862_110 Hb_004319_070 Hb_004319_070 Hb_009486_160--Hb_004319_070 Hb_000363_120 Hb_000363_120 Hb_009486_160--Hb_000363_120 Hb_004899_040 Hb_004899_040 Hb_009486_160--Hb_004899_040 Hb_000671_080 Hb_000671_080 Hb_001257_100--Hb_000671_080 Hb_001257_100--Hb_000926_150 Hb_026198_060 Hb_026198_060 Hb_001257_100--Hb_026198_060 Hb_000649_250 Hb_000649_250 Hb_001257_100--Hb_000649_250 Hb_002119_090 Hb_002119_090 Hb_001257_100--Hb_002119_090 Hb_007054_040 Hb_007054_040 Hb_001862_110--Hb_007054_040 Hb_001541_250 Hb_001541_250 Hb_001862_110--Hb_001541_250 Hb_001488_040 Hb_001488_040 Hb_001862_110--Hb_001488_040 Hb_001862_110--Hb_000926_150 Hb_005765_040 Hb_005765_040 Hb_159295_010--Hb_005765_040 Hb_001911_010 Hb_001911_010 Hb_159295_010--Hb_001911_010 Hb_002249_050 Hb_002249_050 Hb_159295_010--Hb_002249_050 Hb_004526_010 Hb_004526_010 Hb_159295_010--Hb_004526_010 Hb_159295_010--Hb_011249_060 Hb_116349_130 Hb_116349_130 Hb_000926_150--Hb_116349_130 Hb_000035_100 Hb_000035_100 Hb_000926_150--Hb_000035_100 Hb_000856_300 Hb_000856_300 Hb_000926_150--Hb_000856_300 Hb_024650_080 Hb_024650_080 Hb_000926_150--Hb_024650_080 Hb_000373_170 Hb_000373_170 Hb_000926_150--Hb_000373_170 Hb_000479_240 Hb_000479_240 Hb_008948_140--Hb_000479_240 Hb_008948_140--Hb_000856_300 Hb_001341_160 Hb_001341_160 Hb_008948_140--Hb_001341_160 Hb_000862_040 Hb_000862_040 Hb_008948_140--Hb_000862_040 Hb_001723_010 Hb_001723_010 Hb_008948_140--Hb_001723_010 Hb_008948_140--Hb_000926_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.06071 20.9126 10.5013 8.97709 7.06572 4.99185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.32407 5.60044 2.98569 11.1828 6.49369

CAGE analysis