Hb_008948_140

Information

Type -
Description -
Location Contig8948: 146447-168131
Sequence    

Annotation

kegg
ID tcc:TCM_038072
description Uncharacterized protein isoform 1
nr
ID XP_012078779.1
description PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
swissprot
ID F4KBW6
description Nuclear pore complex protein NUP205 OS=Arabidopsis thaliana GN=NUP205 PE=1 SV=1
trembl
ID A0A061GNE7
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_038072 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup205

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61741: 146494-152747 , PASA_asmbl_61742: 153891-164565 , PASA_asmbl_61743: 164689-167426 , PASA_asmbl_61744: 167458-185674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008948_140 0.0 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
2 Hb_000479_240 0.0616526118 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
3 Hb_000856_300 0.0697003268 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
4 Hb_001341_160 0.0706701945 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
5 Hb_000862_040 0.0724989172 - - ara4-interacting protein, putative [Ricinus communis]
6 Hb_001723_010 0.0752549248 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
7 Hb_000926_150 0.0755317946 - - PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
8 Hb_009252_050 0.0758135087 - - protein binding protein, putative [Ricinus communis]
9 Hb_004223_160 0.0780634909 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
10 Hb_000373_170 0.078088903 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
11 Hb_000139_320 0.0785646706 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
12 Hb_001904_030 0.0791990394 - - PREDICTED: importin-5 [Jatropha curcas]
13 Hb_001031_090 0.080147163 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
14 Hb_005568_040 0.0803550007 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
15 Hb_000340_030 0.0809838336 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
16 Hb_005832_010 0.0819046929 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
17 Hb_000243_300 0.0819108457 - - catalytic, putative [Ricinus communis]
18 Hb_001673_050 0.0819725193 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
19 Hb_003604_050 0.0820646296 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
20 Hb_002374_290 0.0826121199 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008948_140 Hb_008948_140 Hb_000479_240 Hb_000479_240 Hb_008948_140--Hb_000479_240 Hb_000856_300 Hb_000856_300 Hb_008948_140--Hb_000856_300 Hb_001341_160 Hb_001341_160 Hb_008948_140--Hb_001341_160 Hb_000862_040 Hb_000862_040 Hb_008948_140--Hb_000862_040 Hb_001723_010 Hb_001723_010 Hb_008948_140--Hb_001723_010 Hb_000926_150 Hb_000926_150 Hb_008948_140--Hb_000926_150 Hb_005568_040 Hb_005568_040 Hb_000479_240--Hb_005568_040 Hb_001904_030 Hb_001904_030 Hb_000479_240--Hb_001904_030 Hb_009252_050 Hb_009252_050 Hb_000479_240--Hb_009252_050 Hb_000008_240 Hb_000008_240 Hb_000479_240--Hb_000008_240 Hb_004645_070 Hb_004645_070 Hb_000479_240--Hb_004645_070 Hb_003604_050 Hb_003604_050 Hb_000479_240--Hb_003604_050 Hb_000856_300--Hb_000926_150 Hb_000580_050 Hb_000580_050 Hb_000856_300--Hb_000580_050 Hb_001008_100 Hb_001008_100 Hb_000856_300--Hb_001008_100 Hb_000373_170 Hb_000373_170 Hb_000856_300--Hb_000373_170 Hb_000787_200 Hb_000787_200 Hb_000856_300--Hb_000787_200 Hb_001341_160--Hb_003604_050 Hb_000172_340 Hb_000172_340 Hb_001341_160--Hb_000172_340 Hb_000010_420 Hb_000010_420 Hb_001341_160--Hb_000010_420 Hb_001341_160--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_001341_160--Hb_004223_160 Hb_000940_200 Hb_000940_200 Hb_000862_040--Hb_000940_200 Hb_005542_140 Hb_005542_140 Hb_000862_040--Hb_005542_140 Hb_000059_020 Hb_000059_020 Hb_000862_040--Hb_000059_020 Hb_001935_140 Hb_001935_140 Hb_000862_040--Hb_001935_140 Hb_000862_040--Hb_005568_040 Hb_002325_040 Hb_002325_040 Hb_000862_040--Hb_002325_040 Hb_000340_030 Hb_000340_030 Hb_001723_010--Hb_000340_030 Hb_004517_020 Hb_004517_020 Hb_001723_010--Hb_004517_020 Hb_003711_010 Hb_003711_010 Hb_001723_010--Hb_003711_010 Hb_000139_320 Hb_000139_320 Hb_001723_010--Hb_000139_320 Hb_001723_010--Hb_000373_170 Hb_000120_910 Hb_000120_910 Hb_001723_010--Hb_000120_910 Hb_116349_130 Hb_116349_130 Hb_000926_150--Hb_116349_130 Hb_000035_100 Hb_000035_100 Hb_000926_150--Hb_000035_100 Hb_001257_100 Hb_001257_100 Hb_000926_150--Hb_001257_100 Hb_024650_080 Hb_024650_080 Hb_000926_150--Hb_024650_080 Hb_000926_150--Hb_000373_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.54697 11.6121 6.47749 6.87172 5.94088 5.78421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15515 3.74965 2.14805 8.99277 5.28607

CAGE analysis