Hb_000787_200

Information

Type -
Description -
Location Contig787: 208144-217748
Sequence    

Annotation

kegg
ID rcu:RCOM_0182650
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002522838.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q6NQ81
description Pentatricopeptide repeat-containing protein At4g04790, mitochondrial OS=Arabidopsis thaliana GN=At4g04790 PE=2 SV=2
trembl
ID B9SA19
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0182650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58140: 208364-209206 , PASA_asmbl_58143: 212006-212414 , PASA_asmbl_58144: 213257-214943 , PASA_asmbl_58145: 215247-215753 , PASA_asmbl_58146: 216001-217259 , PASA_asmbl_58147: 217319-217782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_200 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000318_150 0.0626576494 - - RNA-binding protein Nova-1, putative [Ricinus communis]
3 Hb_011674_040 0.0644199043 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
4 Hb_000834_230 0.0693077088 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
5 Hb_080147_050 0.0730975036 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
6 Hb_000342_050 0.0740615377 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
7 Hb_000270_170 0.0742746432 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
8 Hb_000220_120 0.0746799982 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
9 Hb_000173_190 0.0757940433 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003636_080 0.0769352825 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
11 Hb_000976_110 0.0771969639 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
12 Hb_000009_030 0.0773657453 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
13 Hb_002357_070 0.0797275821 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
14 Hb_000979_220 0.0805259476 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
15 Hb_000960_080 0.0825168518 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
16 Hb_001507_050 0.0847754379 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_027506_010 0.0856199666 - - PREDICTED: cullin-4 [Jatropha curcas]
18 Hb_007245_020 0.0859273186 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
19 Hb_021576_010 0.0861345089 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
20 Hb_000856_300 0.0881014719 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]

Gene co-expression network

sample Hb_000787_200 Hb_000787_200 Hb_000318_150 Hb_000318_150 Hb_000787_200--Hb_000318_150 Hb_011674_040 Hb_011674_040 Hb_000787_200--Hb_011674_040 Hb_000834_230 Hb_000834_230 Hb_000787_200--Hb_000834_230 Hb_080147_050 Hb_080147_050 Hb_000787_200--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000787_200--Hb_000342_050 Hb_000270_170 Hb_000270_170 Hb_000787_200--Hb_000270_170 Hb_000960_080 Hb_000960_080 Hb_000318_150--Hb_000960_080 Hb_002357_070 Hb_002357_070 Hb_000318_150--Hb_002357_070 Hb_000059_240 Hb_000059_240 Hb_000318_150--Hb_000059_240 Hb_000318_150--Hb_000270_170 Hb_000173_190 Hb_000173_190 Hb_000318_150--Hb_000173_190 Hb_000976_110 Hb_000976_110 Hb_011674_040--Hb_000976_110 Hb_011674_040--Hb_000270_170 Hb_003636_080 Hb_003636_080 Hb_011674_040--Hb_003636_080 Hb_011674_040--Hb_000318_150 Hb_011674_040--Hb_000960_080 Hb_000834_230--Hb_080147_050 Hb_000321_090 Hb_000321_090 Hb_000834_230--Hb_000321_090 Hb_000049_250 Hb_000049_250 Hb_000834_230--Hb_000049_250 Hb_000220_120 Hb_000220_120 Hb_000834_230--Hb_000220_120 Hb_001322_180 Hb_001322_180 Hb_000834_230--Hb_001322_180 Hb_020805_180 Hb_020805_180 Hb_080147_050--Hb_020805_180 Hb_080147_050--Hb_000321_090 Hb_158845_060 Hb_158845_060 Hb_080147_050--Hb_158845_060 Hb_007245_020 Hb_007245_020 Hb_080147_050--Hb_007245_020 Hb_004837_280 Hb_004837_280 Hb_000342_050--Hb_004837_280 Hb_001811_170 Hb_001811_170 Hb_000342_050--Hb_001811_170 Hb_001226_130 Hb_001226_130 Hb_000342_050--Hb_001226_130 Hb_001587_030 Hb_001587_030 Hb_000342_050--Hb_001587_030 Hb_000152_700 Hb_000152_700 Hb_000342_050--Hb_000152_700 Hb_000270_170--Hb_000960_080 Hb_001507_050 Hb_001507_050 Hb_000270_170--Hb_001507_050 Hb_006100_020 Hb_006100_020 Hb_000270_170--Hb_006100_020 Hb_001488_020 Hb_001488_020 Hb_000270_170--Hb_001488_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.55097 4.54525 4.07843 3.62197 2.22532 1.66835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60258 1.98912 1.27693 5.98686 4.31718

CAGE analysis