Hb_001322_180

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig1322: 162123-169307
Sequence    

Annotation

kegg
ID rcu:RCOM_0120660
description GATA transcription factor, putative
nr
ID XP_012070091.1
description PREDICTED: GATA transcription factor 26 [Jatropha curcas]
swissprot
ID Q8W4H1
description GATA transcription factor 26 OS=Arabidopsis thaliana GN=GATA26 PE=2 SV=1
trembl
ID A0A067L760
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03475 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09283: 168719-169192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_180 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
2 Hb_000321_090 0.0731377498 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
3 Hb_000049_250 0.084825513 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
4 Hb_006829_100 0.0849168281 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000834_230 0.0885258727 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
6 Hb_000035_010 0.090647695 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
7 Hb_002027_190 0.0918488111 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
8 Hb_000395_220 0.0951310869 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_000175_120 0.095180641 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
10 Hb_020805_180 0.0971473014 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
11 Hb_000220_120 0.0988255549 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
12 Hb_007765_030 0.0993468602 - - PREDICTED: neutral ceramidase [Jatropha curcas]
13 Hb_001414_040 0.1025063078 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
14 Hb_000009_120 0.1025265953 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
15 Hb_000157_070 0.1026884495 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
16 Hb_169051_010 0.1038983203 - - JHL06B08.1 [Jatropha curcas]
17 Hb_135959_010 0.1057378289 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
18 Hb_000080_110 0.1070840779 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
19 Hb_006907_140 0.1086808503 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000271_120 0.1093207348 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_001322_180 Hb_001322_180 Hb_000321_090 Hb_000321_090 Hb_001322_180--Hb_000321_090 Hb_000049_250 Hb_000049_250 Hb_001322_180--Hb_000049_250 Hb_006829_100 Hb_006829_100 Hb_001322_180--Hb_006829_100 Hb_000834_230 Hb_000834_230 Hb_001322_180--Hb_000834_230 Hb_000035_010 Hb_000035_010 Hb_001322_180--Hb_000035_010 Hb_002027_190 Hb_002027_190 Hb_001322_180--Hb_002027_190 Hb_000080_110 Hb_000080_110 Hb_000321_090--Hb_000080_110 Hb_080147_050 Hb_080147_050 Hb_000321_090--Hb_080147_050 Hb_000321_090--Hb_002027_190 Hb_020805_180 Hb_020805_180 Hb_000321_090--Hb_020805_180 Hb_000321_090--Hb_000049_250 Hb_011925_020 Hb_011925_020 Hb_000049_250--Hb_011925_020 Hb_000049_250--Hb_000080_110 Hb_033799_010 Hb_033799_010 Hb_000049_250--Hb_033799_010 Hb_005074_020 Hb_005074_020 Hb_000049_250--Hb_005074_020 Hb_000220_120 Hb_000220_120 Hb_000049_250--Hb_000220_120 Hb_007747_170 Hb_007747_170 Hb_006829_100--Hb_007747_170 Hb_007426_140 Hb_007426_140 Hb_006829_100--Hb_007426_140 Hb_019840_030 Hb_019840_030 Hb_006829_100--Hb_019840_030 Hb_000009_120 Hb_000009_120 Hb_006829_100--Hb_000009_120 Hb_006829_100--Hb_000834_230 Hb_000787_200 Hb_000787_200 Hb_000834_230--Hb_000787_200 Hb_000834_230--Hb_080147_050 Hb_000834_230--Hb_000321_090 Hb_000834_230--Hb_000049_250 Hb_000834_230--Hb_000220_120 Hb_000035_010--Hb_000049_250 Hb_000175_120 Hb_000175_120 Hb_000035_010--Hb_000175_120 Hb_009486_090 Hb_009486_090 Hb_000035_010--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_000035_010--Hb_006031_010 Hb_114151_020 Hb_114151_020 Hb_000035_010--Hb_114151_020 Hb_000950_060 Hb_000950_060 Hb_000035_010--Hb_000950_060 Hb_002851_010 Hb_002851_010 Hb_002027_190--Hb_002851_010 Hb_002027_190--Hb_000080_110 Hb_002027_190--Hb_020805_180 Hb_002027_190--Hb_033799_010 Hb_002027_190--Hb_007747_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.96323 15.8817 7.49127 10.0075 5.55291 6.68519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.07097 2.63133 3.022 23.3238 10.5376

CAGE analysis