Hb_002027_190

Information

Type -
Description -
Location Contig2027: 90279-97313
Sequence    

Annotation

kegg
ID rcu:RCOM_0647030
description breast carcinoma amplified sequence, putative
nr
ID XP_012092325.1
description PREDICTED: autophagy-related protein 18g [Jatropha curcas]
swissprot
ID Q8GUL1
description Autophagy-related protein 18g OS=Arabidopsis thaliana GN=ATG18G PE=2 SV=1
trembl
ID A0A067JFG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21999 PE=4 SV=1
Gene Ontology
ID GO:0005515
description autophagy-related protein 18g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20692: 94474-97682 , PASA_asmbl_20693: 90330-97682 , PASA_asmbl_20694: 94474-96835 , PASA_asmbl_20697: 95507-95786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_190 0.0 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
2 Hb_000321_090 0.0660919046 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
3 Hb_002851_010 0.0667953381 - - sugar transporter, putative [Ricinus communis]
4 Hb_000080_110 0.0737064595 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
5 Hb_020805_180 0.076745613 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
6 Hb_033799_010 0.0802666148 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
7 Hb_007747_170 0.0842743192 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
8 Hb_185830_070 0.0900399743 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
9 Hb_001322_180 0.0918488111 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
10 Hb_000049_250 0.0923919604 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
11 Hb_000649_060 0.0928386913 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
12 Hb_135959_010 0.0929019455 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
13 Hb_075315_010 0.0942390427 - - ornithine aminotransferase [Camellia sinensis]
14 Hb_004450_070 0.0953177026 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
15 Hb_000175_120 0.095918722 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
16 Hb_007632_010 0.0968760623 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
17 Hb_006829_100 0.0971740399 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000574_530 0.0973768822 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
19 Hb_007245_020 0.0977628158 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
20 Hb_000890_070 0.0986751149 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002027_190 Hb_002027_190 Hb_000321_090 Hb_000321_090 Hb_002027_190--Hb_000321_090 Hb_002851_010 Hb_002851_010 Hb_002027_190--Hb_002851_010 Hb_000080_110 Hb_000080_110 Hb_002027_190--Hb_000080_110 Hb_020805_180 Hb_020805_180 Hb_002027_190--Hb_020805_180 Hb_033799_010 Hb_033799_010 Hb_002027_190--Hb_033799_010 Hb_007747_170 Hb_007747_170 Hb_002027_190--Hb_007747_170 Hb_000321_090--Hb_000080_110 Hb_080147_050 Hb_080147_050 Hb_000321_090--Hb_080147_050 Hb_000321_090--Hb_020805_180 Hb_000049_250 Hb_000049_250 Hb_000321_090--Hb_000049_250 Hb_001322_180 Hb_001322_180 Hb_000321_090--Hb_001322_180 Hb_135959_010 Hb_135959_010 Hb_002851_010--Hb_135959_010 Hb_002851_010--Hb_020805_180 Hb_000157_070 Hb_000157_070 Hb_002851_010--Hb_000157_070 Hb_000649_060 Hb_000649_060 Hb_002851_010--Hb_000649_060 Hb_003058_200 Hb_003058_200 Hb_002851_010--Hb_003058_200 Hb_005074_020 Hb_005074_020 Hb_000080_110--Hb_005074_020 Hb_000080_110--Hb_033799_010 Hb_000080_110--Hb_000049_250 Hb_011925_020 Hb_011925_020 Hb_000080_110--Hb_011925_020 Hb_006478_030 Hb_006478_030 Hb_000080_110--Hb_006478_030 Hb_020805_180--Hb_080147_050 Hb_020805_180--Hb_000649_060 Hb_020805_180--Hb_000157_070 Hb_171554_040 Hb_171554_040 Hb_033799_010--Hb_171554_040 Hb_001511_180 Hb_001511_180 Hb_033799_010--Hb_001511_180 Hb_033799_010--Hb_000049_250 Hb_007245_020 Hb_007245_020 Hb_033799_010--Hb_007245_020 Hb_033799_010--Hb_005074_020 Hb_019840_030 Hb_019840_030 Hb_007747_170--Hb_019840_030 Hb_004450_070 Hb_004450_070 Hb_007747_170--Hb_004450_070 Hb_000608_230 Hb_000608_230 Hb_007747_170--Hb_000608_230 Hb_007747_170--Hb_007245_020 Hb_000331_580 Hb_000331_580 Hb_007747_170--Hb_000331_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.92384 10.2946 4.2415 8.93705 5.62798 5.07047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35266 2.30992 4.09608 14.6404 8.95145

CAGE analysis