Hb_006478_030

Information

Type -
Description -
Location Contig6478: 19355-28096
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05050g
description POPTRDRAFT_709955; hypothetical protein
nr
ID XP_002306789.2
description hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
swissprot
ID F4HZB5
description Protein NETWORKED 1D OS=Arabidopsis thaliana GN=NET1D PE=3 SV=1
trembl
ID B9H8C2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s23510g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52388: 19543-23203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006478_030 0.0 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
2 Hb_160608_010 0.0533351721 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
3 Hb_007245_020 0.0574719865 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
4 Hb_002357_070 0.0643087583 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
5 Hb_000318_150 0.0706285676 - - RNA-binding protein Nova-1, putative [Ricinus communis]
6 Hb_000080_110 0.073687446 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
7 Hb_000206_160 0.0758802624 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
8 Hb_005701_050 0.0761891092 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
9 Hb_005074_020 0.07751206 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
10 Hb_080147_050 0.0778366845 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
11 Hb_033799_010 0.0803920467 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
12 Hb_009476_120 0.0804981457 - - Clathrin heavy chain 1 [Glycine soja]
13 Hb_143629_020 0.0805168031 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
14 Hb_000428_030 0.0805271952 - - hypothetical protein RCOM_1520720 [Ricinus communis]
15 Hb_000321_090 0.0807434289 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
16 Hb_000009_410 0.0807855861 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
17 Hb_003216_090 0.0816534668 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
18 Hb_000035_100 0.0818280767 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_002686_140 0.081828341 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
20 Hb_000358_220 0.0838045224 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_006478_030 Hb_006478_030 Hb_160608_010 Hb_160608_010 Hb_006478_030--Hb_160608_010 Hb_007245_020 Hb_007245_020 Hb_006478_030--Hb_007245_020 Hb_002357_070 Hb_002357_070 Hb_006478_030--Hb_002357_070 Hb_000318_150 Hb_000318_150 Hb_006478_030--Hb_000318_150 Hb_000080_110 Hb_000080_110 Hb_006478_030--Hb_000080_110 Hb_000206_160 Hb_000206_160 Hb_006478_030--Hb_000206_160 Hb_003661_010 Hb_003661_010 Hb_160608_010--Hb_003661_010 Hb_005305_130 Hb_005305_130 Hb_160608_010--Hb_005305_130 Hb_001414_010 Hb_001414_010 Hb_160608_010--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_160608_010--Hb_001507_050 Hb_160608_010--Hb_000318_150 Hb_007245_020--Hb_002357_070 Hb_123531_010 Hb_123531_010 Hb_007245_020--Hb_123531_010 Hb_000172_340 Hb_000172_340 Hb_007245_020--Hb_000172_340 Hb_060980_010 Hb_060980_010 Hb_007245_020--Hb_060980_010 Hb_000103_290 Hb_000103_290 Hb_007245_020--Hb_000103_290 Hb_001221_180 Hb_001221_180 Hb_002357_070--Hb_001221_180 Hb_002357_070--Hb_123531_010 Hb_000934_210 Hb_000934_210 Hb_002357_070--Hb_000934_210 Hb_002357_070--Hb_000318_150 Hb_012055_110 Hb_012055_110 Hb_002357_070--Hb_012055_110 Hb_000960_080 Hb_000960_080 Hb_000318_150--Hb_000960_080 Hb_000787_200 Hb_000787_200 Hb_000318_150--Hb_000787_200 Hb_000059_240 Hb_000059_240 Hb_000318_150--Hb_000059_240 Hb_000270_170 Hb_000270_170 Hb_000318_150--Hb_000270_170 Hb_000173_190 Hb_000173_190 Hb_000318_150--Hb_000173_190 Hb_000321_090 Hb_000321_090 Hb_000080_110--Hb_000321_090 Hb_005074_020 Hb_005074_020 Hb_000080_110--Hb_005074_020 Hb_033799_010 Hb_033799_010 Hb_000080_110--Hb_033799_010 Hb_000049_250 Hb_000049_250 Hb_000080_110--Hb_000049_250 Hb_011925_020 Hb_011925_020 Hb_000080_110--Hb_011925_020 Hb_027506_010 Hb_027506_010 Hb_000206_160--Hb_027506_010 Hb_000676_330 Hb_000676_330 Hb_000206_160--Hb_000676_330 Hb_003758_010 Hb_003758_010 Hb_000206_160--Hb_003758_010 Hb_005701_050 Hb_005701_050 Hb_000206_160--Hb_005701_050 Hb_000996_020 Hb_000996_020 Hb_000206_160--Hb_000996_020 Hb_000373_170 Hb_000373_170 Hb_000206_160--Hb_000373_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.11945 21.3172 15.682 14.0507 9.21393 7.97982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.59666 4.78709 8.62186 21.3077 19.8361

CAGE analysis