Hb_007245_020

Information

Type -
Description -
Location Contig7245: 8070-11680
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07510g
description POPTRDRAFT_880825; hypothetical protein
nr
ID XP_011041458.1
description PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
swissprot
ID O60508
description Pre-mRNA-processing factor 17 OS=Homo sapiens GN=CDC40 PE=1 SV=1
trembl
ID B9HSV2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07510g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55819: 8002-11584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007245_020 0.0 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
2 Hb_002357_070 0.046028484 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
3 Hb_123531_010 0.0529390145 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
4 Hb_006478_030 0.0574719865 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
5 Hb_000172_340 0.0628083587 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
6 Hb_060980_010 0.064585299 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
7 Hb_000103_290 0.068166321 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
8 Hb_000358_100 0.0696258834 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
9 Hb_012055_110 0.0699232141 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
10 Hb_000934_210 0.0712085383 - - suppressor of ty, putative [Ricinus communis]
11 Hb_005701_050 0.0712181212 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
12 Hb_000331_580 0.0712802824 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
13 Hb_024650_080 0.0720961293 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
14 Hb_003216_090 0.0722964368 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
15 Hb_000066_150 0.0724000616 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
16 Hb_000318_150 0.0733103043 - - RNA-binding protein Nova-1, putative [Ricinus communis]
17 Hb_000020_160 0.0734254093 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
18 Hb_160608_010 0.0738660981 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
19 Hb_080147_050 0.0741584811 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
20 Hb_000358_220 0.074321466 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_007245_020 Hb_007245_020 Hb_002357_070 Hb_002357_070 Hb_007245_020--Hb_002357_070 Hb_123531_010 Hb_123531_010 Hb_007245_020--Hb_123531_010 Hb_006478_030 Hb_006478_030 Hb_007245_020--Hb_006478_030 Hb_000172_340 Hb_000172_340 Hb_007245_020--Hb_000172_340 Hb_060980_010 Hb_060980_010 Hb_007245_020--Hb_060980_010 Hb_000103_290 Hb_000103_290 Hb_007245_020--Hb_000103_290 Hb_001221_180 Hb_001221_180 Hb_002357_070--Hb_001221_180 Hb_002357_070--Hb_123531_010 Hb_000934_210 Hb_000934_210 Hb_002357_070--Hb_000934_210 Hb_000318_150 Hb_000318_150 Hb_002357_070--Hb_000318_150 Hb_012055_110 Hb_012055_110 Hb_002357_070--Hb_012055_110 Hb_002007_110 Hb_002007_110 Hb_123531_010--Hb_002007_110 Hb_123531_010--Hb_000934_210 Hb_000331_580 Hb_000331_580 Hb_123531_010--Hb_000331_580 Hb_123531_010--Hb_000172_340 Hb_160608_010 Hb_160608_010 Hb_006478_030--Hb_160608_010 Hb_006478_030--Hb_002357_070 Hb_006478_030--Hb_000318_150 Hb_000080_110 Hb_000080_110 Hb_006478_030--Hb_000080_110 Hb_000206_160 Hb_000206_160 Hb_006478_030--Hb_000206_160 Hb_001904_030 Hb_001904_030 Hb_000172_340--Hb_001904_030 Hb_005832_010 Hb_005832_010 Hb_000172_340--Hb_005832_010 Hb_002005_030 Hb_002005_030 Hb_000172_340--Hb_002005_030 Hb_000066_150 Hb_000066_150 Hb_000172_340--Hb_000066_150 Hb_016172_030 Hb_016172_030 Hb_060980_010--Hb_016172_030 Hb_027506_010 Hb_027506_010 Hb_060980_010--Hb_027506_010 Hb_019840_030 Hb_019840_030 Hb_060980_010--Hb_019840_030 Hb_065500_020 Hb_065500_020 Hb_060980_010--Hb_065500_020 Hb_000409_050 Hb_000409_050 Hb_060980_010--Hb_000409_050 Hb_000001_170 Hb_000001_170 Hb_060980_010--Hb_000001_170 Hb_048476_080 Hb_048476_080 Hb_000103_290--Hb_048476_080 Hb_000103_290--Hb_016172_030 Hb_000954_010 Hb_000954_010 Hb_000103_290--Hb_000954_010 Hb_000103_290--Hb_060980_010 Hb_000103_290--Hb_027506_010 Hb_024650_080 Hb_024650_080 Hb_000103_290--Hb_024650_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.99796 25.0751 16.6594 21.2946 13.2415 12.3969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.3427 7.55795 8.69955 24.7058 23.889

CAGE analysis