Hb_012055_110

Information

Type -
Description -
Location Contig12055: 85775-99596
Sequence    

Annotation

kegg
ID rcu:RCOM_1155230
description tetratricopeptide repeat protein, tpr, putative
nr
ID XP_002524965.1
description tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
swissprot
ID F4JS25
description Suppressor of RPS4-RLD 1 OS=Arabidopsis thaliana GN=SRFR1 PE=1 SV=1
trembl
ID B9SG46
description Tetratricopeptide repeat protein, tpr, putative OS=Ricinus communis GN=RCOM_1155230 PE=4 SV=1
Gene Ontology
ID GO:0005634
description suppressor of rps4-rld 1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06408: 85919-97965 , PASA_asmbl_06409: 86120-97965
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012055_110 0.0 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
2 Hb_002007_110 0.0478311855 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
3 Hb_000066_150 0.0500914925 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
4 Hb_000879_040 0.0598880869 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
5 Hb_000958_050 0.060537035 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
6 Hb_002357_070 0.0618815261 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
7 Hb_005701_050 0.062049878 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
8 Hb_005215_010 0.0630400165 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
9 Hb_000934_210 0.0640902791 - - suppressor of ty, putative [Ricinus communis]
10 Hb_000358_220 0.064116496 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
11 Hb_123531_010 0.0642312576 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
12 Hb_000059_230 0.0642680517 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
13 Hb_133702_020 0.0647677483 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000996_020 0.0659602231 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
15 Hb_000684_350 0.0663135278 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
16 Hb_000568_050 0.0667851602 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
17 Hb_000317_100 0.0672026955 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
18 Hb_011174_020 0.0679992383 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
19 Hb_001935_160 0.0681093356 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
20 Hb_000336_020 0.0681295876 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_012055_110 Hb_012055_110 Hb_002007_110 Hb_002007_110 Hb_012055_110--Hb_002007_110 Hb_000066_150 Hb_000066_150 Hb_012055_110--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_000958_050 Hb_000958_050 Hb_012055_110--Hb_000958_050 Hb_002357_070 Hb_002357_070 Hb_012055_110--Hb_002357_070 Hb_005701_050 Hb_005701_050 Hb_012055_110--Hb_005701_050 Hb_123531_010 Hb_123531_010 Hb_002007_110--Hb_123531_010 Hb_005832_010 Hb_005832_010 Hb_002007_110--Hb_005832_010 Hb_000331_580 Hb_000331_580 Hb_002007_110--Hb_000331_580 Hb_002007_110--Hb_000066_150 Hb_006031_010 Hb_006031_010 Hb_002007_110--Hb_006031_010 Hb_010315_020 Hb_010315_020 Hb_000066_150--Hb_010315_020 Hb_000358_220 Hb_000358_220 Hb_000066_150--Hb_000358_220 Hb_000172_340 Hb_000172_340 Hb_000066_150--Hb_000172_340 Hb_004032_200 Hb_004032_200 Hb_000066_150--Hb_004032_200 Hb_001318_070 Hb_001318_070 Hb_000879_040--Hb_001318_070 Hb_000243_210 Hb_000243_210 Hb_000879_040--Hb_000243_210 Hb_000027_050 Hb_000027_050 Hb_000879_040--Hb_000027_050 Hb_000099_040 Hb_000099_040 Hb_000879_040--Hb_000099_040 Hb_001430_080 Hb_001430_080 Hb_000879_040--Hb_001430_080 Hb_000958_050--Hb_005701_050 Hb_000003_410 Hb_000003_410 Hb_000958_050--Hb_000003_410 Hb_000934_210 Hb_000934_210 Hb_000958_050--Hb_000934_210 Hb_000645_130 Hb_000645_130 Hb_000958_050--Hb_000645_130 Hb_000958_050--Hb_002007_110 Hb_007245_020 Hb_007245_020 Hb_002357_070--Hb_007245_020 Hb_001221_180 Hb_001221_180 Hb_002357_070--Hb_001221_180 Hb_002357_070--Hb_123531_010 Hb_002357_070--Hb_000934_210 Hb_000318_150 Hb_000318_150 Hb_002357_070--Hb_000318_150 Hb_000664_120 Hb_000664_120 Hb_005701_050--Hb_000664_120 Hb_000996_020 Hb_000996_020 Hb_005701_050--Hb_000996_020 Hb_005701_050--Hb_000934_210 Hb_000206_160 Hb_000206_160 Hb_005701_050--Hb_000206_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.23103 16.7441 13.0805 13.2904 11.7932 11.4069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.91812 5.42782 6.616 14.0038 18.8998

CAGE analysis