Hb_000934_210

Information

Type -
Description -
Location Contig934: 159155-169309
Sequence    

Annotation

kegg
ID rcu:RCOM_0138850
description suppressor of ty, putative
nr
ID XP_002526173.1
description suppressor of ty, putative [Ricinus communis]
swissprot
ID Q9STN3
description Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2
trembl
ID B9SJK4
description Transcription elongation factor SPT5 OS=Ricinus communis GN=RCOM_0138850 PE=3 SV=1
Gene Ontology
ID GO:0005634
description transcription elongation factor spt5 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62942: 159366-168871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_210 0.0 - - suppressor of ty, putative [Ricinus communis]
2 Hb_027472_220 0.0504158595 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
3 Hb_012244_020 0.0525087545 - - calpain, putative [Ricinus communis]
4 Hb_123531_010 0.0534549689 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
5 Hb_002007_110 0.0556618555 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
6 Hb_002357_070 0.0569379347 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
7 Hb_000958_050 0.0590682127 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
8 Hb_005832_010 0.0616218268 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
9 Hb_001951_170 0.0620135896 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
10 Hb_000003_410 0.0633501927 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
11 Hb_005701_050 0.064072391 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
12 Hb_011174_020 0.0640792578 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
13 Hb_012055_110 0.0640902791 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
14 Hb_006031_010 0.0647637613 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
15 Hb_001904_030 0.0663938638 - - PREDICTED: importin-5 [Jatropha curcas]
16 Hb_002805_210 0.0668382226 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
17 Hb_005408_030 0.0674932241 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
18 Hb_000009_410 0.0683640872 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
19 Hb_003216_090 0.0686714789 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
20 Hb_000664_120 0.069028233 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000934_210 Hb_000934_210 Hb_027472_220 Hb_027472_220 Hb_000934_210--Hb_027472_220 Hb_012244_020 Hb_012244_020 Hb_000934_210--Hb_012244_020 Hb_123531_010 Hb_123531_010 Hb_000934_210--Hb_123531_010 Hb_002007_110 Hb_002007_110 Hb_000934_210--Hb_002007_110 Hb_002357_070 Hb_002357_070 Hb_000934_210--Hb_002357_070 Hb_000958_050 Hb_000958_050 Hb_000934_210--Hb_000958_050 Hb_005402_040 Hb_005402_040 Hb_027472_220--Hb_005402_040 Hb_001341_180 Hb_001341_180 Hb_027472_220--Hb_001341_180 Hb_002805_210 Hb_002805_210 Hb_027472_220--Hb_002805_210 Hb_002350_010 Hb_002350_010 Hb_027472_220--Hb_002350_010 Hb_005832_010 Hb_005832_010 Hb_027472_220--Hb_005832_010 Hb_005186_040 Hb_005186_040 Hb_012244_020--Hb_005186_040 Hb_011174_020 Hb_011174_020 Hb_012244_020--Hb_011174_020 Hb_000363_300 Hb_000363_300 Hb_012244_020--Hb_000363_300 Hb_001648_020 Hb_001648_020 Hb_012244_020--Hb_001648_020 Hb_000925_090 Hb_000925_090 Hb_012244_020--Hb_000925_090 Hb_123531_010--Hb_002007_110 Hb_007245_020 Hb_007245_020 Hb_123531_010--Hb_007245_020 Hb_000331_580 Hb_000331_580 Hb_123531_010--Hb_000331_580 Hb_123531_010--Hb_002357_070 Hb_000172_340 Hb_000172_340 Hb_123531_010--Hb_000172_340 Hb_012055_110 Hb_012055_110 Hb_002007_110--Hb_012055_110 Hb_002007_110--Hb_005832_010 Hb_002007_110--Hb_000331_580 Hb_000066_150 Hb_000066_150 Hb_002007_110--Hb_000066_150 Hb_006031_010 Hb_006031_010 Hb_002007_110--Hb_006031_010 Hb_002357_070--Hb_007245_020 Hb_001221_180 Hb_001221_180 Hb_002357_070--Hb_001221_180 Hb_000318_150 Hb_000318_150 Hb_002357_070--Hb_000318_150 Hb_002357_070--Hb_012055_110 Hb_005701_050 Hb_005701_050 Hb_000958_050--Hb_005701_050 Hb_000003_410 Hb_000003_410 Hb_000958_050--Hb_000003_410 Hb_000645_130 Hb_000645_130 Hb_000958_050--Hb_000645_130 Hb_000958_050--Hb_002007_110 Hb_000958_050--Hb_012055_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.10594 23.9829 13.8525 12.3645 13.6153 11.8614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.2396 7.27667 8.15149 19.3562 22.6551

CAGE analysis