Hb_001341_180

Information

Type -
Description -
Location Contig1341: 175214-180175
Sequence    

Annotation

kegg
ID rcu:RCOM_1400450
description protein with unknown function
nr
ID XP_012064857.1
description PREDICTED: transmembrane protein 209 [Jatropha curcas]
swissprot
ID Q6GPP7
description Transmembrane protein 209 OS=Xenopus laevis GN=tmem209 PE=2 SV=1
trembl
ID A0A067LIL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05561 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09709: 175398-178198 , PASA_asmbl_09710: 178401-178778
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_180 0.0 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
2 Hb_004048_120 0.0549572672 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
3 Hb_027472_220 0.0589304675 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
4 Hb_003280_020 0.0668074726 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
5 Hb_005402_040 0.0679856406 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
6 Hb_002639_080 0.0681097119 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
7 Hb_000261_480 0.0697498057 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
8 Hb_041327_010 0.0715391139 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
9 Hb_005215_010 0.071702213 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
10 Hb_011819_020 0.0724240502 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
11 Hb_000317_100 0.0733674758 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
12 Hb_123531_010 0.074144266 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
13 Hb_004143_160 0.0752495313 - - SAB, putative [Ricinus communis]
14 Hb_007994_010 0.0772415703 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
15 Hb_012760_100 0.0777006626 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
16 Hb_004208_050 0.0778123476 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
17 Hb_012286_040 0.0780701647 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
18 Hb_001431_120 0.0788135339 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
19 Hb_011231_020 0.0794905808 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
20 Hb_000934_210 0.0807160967 - - suppressor of ty, putative [Ricinus communis]

Gene co-expression network

sample Hb_001341_180 Hb_001341_180 Hb_004048_120 Hb_004048_120 Hb_001341_180--Hb_004048_120 Hb_027472_220 Hb_027472_220 Hb_001341_180--Hb_027472_220 Hb_003280_020 Hb_003280_020 Hb_001341_180--Hb_003280_020 Hb_005402_040 Hb_005402_040 Hb_001341_180--Hb_005402_040 Hb_002639_080 Hb_002639_080 Hb_001341_180--Hb_002639_080 Hb_000261_480 Hb_000261_480 Hb_001341_180--Hb_000261_480 Hb_004048_120--Hb_003280_020 Hb_004143_160 Hb_004143_160 Hb_004048_120--Hb_004143_160 Hb_002025_330 Hb_002025_330 Hb_004048_120--Hb_002025_330 Hb_002749_060 Hb_002749_060 Hb_004048_120--Hb_002749_060 Hb_004048_120--Hb_000261_480 Hb_000358_050 Hb_000358_050 Hb_004048_120--Hb_000358_050 Hb_000934_210 Hb_000934_210 Hb_027472_220--Hb_000934_210 Hb_027472_220--Hb_005402_040 Hb_002805_210 Hb_002805_210 Hb_027472_220--Hb_002805_210 Hb_002350_010 Hb_002350_010 Hb_027472_220--Hb_002350_010 Hb_005832_010 Hb_005832_010 Hb_027472_220--Hb_005832_010 Hb_003280_020--Hb_002749_060 Hb_003280_020--Hb_002025_330 Hb_011819_020 Hb_011819_020 Hb_003280_020--Hb_011819_020 Hb_003280_020--Hb_000261_480 Hb_012330_010 Hb_012330_010 Hb_003280_020--Hb_012330_010 Hb_011202_020 Hb_011202_020 Hb_005402_040--Hb_011202_020 Hb_005357_260 Hb_005357_260 Hb_005402_040--Hb_005357_260 Hb_003124_160 Hb_003124_160 Hb_005402_040--Hb_003124_160 Hb_000025_710 Hb_000025_710 Hb_005402_040--Hb_000025_710 Hb_000395_070 Hb_000395_070 Hb_005402_040--Hb_000395_070 Hb_001188_020 Hb_001188_020 Hb_002639_080--Hb_001188_020 Hb_041327_010 Hb_041327_010 Hb_002639_080--Hb_041327_010 Hb_071130_010 Hb_071130_010 Hb_002639_080--Hb_071130_010 Hb_002639_080--Hb_004143_160 Hb_000069_120 Hb_000069_120 Hb_002639_080--Hb_000069_120 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010 Hb_004208_050 Hb_004208_050 Hb_000261_480--Hb_004208_050 Hb_000261_480--Hb_011819_020 Hb_002890_130 Hb_002890_130 Hb_000261_480--Hb_002890_130 Hb_001377_350 Hb_001377_350 Hb_000261_480--Hb_001377_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5921 3.77743 2.67973 2.96565 3.2491 3.60462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.71022 1.76475 1.93949 5.18985 4.54204

CAGE analysis