Hb_002025_330

Information

Type -
Description -
Location Contig2025: 251663-255467
Sequence    

Annotation

kegg
ID rcu:RCOM_0776160
description peptide transporter, putative
nr
ID XP_002521890.1
description peptide transporter, putative [Ricinus communis]
swissprot
ID P46032
description Protein NRT1/ PTR FAMILY 8.3 OS=Arabidopsis thaliana GN=NPF8.3 PE=1 SV=1
trembl
ID B9S7C1
description Peptide transporter, putative OS=Ricinus communis GN=RCOM_0776160 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20602: 251735-255346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_330 0.0 - - peptide transporter, putative [Ricinus communis]
2 Hb_003280_020 0.0501709795 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
3 Hb_004048_120 0.0502716333 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
4 Hb_004143_160 0.06031412 - - SAB, putative [Ricinus communis]
5 Hb_000922_030 0.0649458976 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
6 Hb_000358_050 0.0678101441 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
7 Hb_055062_040 0.0682661698 - - ceramidase, putative [Ricinus communis]
8 Hb_025193_040 0.071550315 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
9 Hb_012330_010 0.0751903541 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
10 Hb_000976_100 0.0757407778 - - eukaryotic translation elongation factor, putative [Ricinus communis]
11 Hb_002874_110 0.0772110173 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
12 Hb_002749_060 0.0785183386 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
13 Hb_000261_480 0.0798186301 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
14 Hb_000890_070 0.080244864 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
15 Hb_001105_020 0.0814988892 - - expressed protein, putative [Ricinus communis]
16 Hb_000001_170 0.0839888248 - - amino acid transporter, putative [Ricinus communis]
17 Hb_011537_060 0.0844956869 - - UPF0061 protein azo1574 [Morus notabilis]
18 Hb_012733_070 0.0848758747 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
19 Hb_011819_020 0.0849884743 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
20 Hb_004208_050 0.0861951881 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002025_330 Hb_002025_330 Hb_003280_020 Hb_003280_020 Hb_002025_330--Hb_003280_020 Hb_004048_120 Hb_004048_120 Hb_002025_330--Hb_004048_120 Hb_004143_160 Hb_004143_160 Hb_002025_330--Hb_004143_160 Hb_000922_030 Hb_000922_030 Hb_002025_330--Hb_000922_030 Hb_000358_050 Hb_000358_050 Hb_002025_330--Hb_000358_050 Hb_055062_040 Hb_055062_040 Hb_002025_330--Hb_055062_040 Hb_003280_020--Hb_004048_120 Hb_002749_060 Hb_002749_060 Hb_003280_020--Hb_002749_060 Hb_011819_020 Hb_011819_020 Hb_003280_020--Hb_011819_020 Hb_000261_480 Hb_000261_480 Hb_003280_020--Hb_000261_480 Hb_012330_010 Hb_012330_010 Hb_003280_020--Hb_012330_010 Hb_004048_120--Hb_004143_160 Hb_004048_120--Hb_002749_060 Hb_004048_120--Hb_000261_480 Hb_004048_120--Hb_000358_050 Hb_004143_160--Hb_000358_050 Hb_007994_010 Hb_007994_010 Hb_004143_160--Hb_007994_010 Hb_135572_010 Hb_135572_010 Hb_004143_160--Hb_135572_010 Hb_002639_080 Hb_002639_080 Hb_004143_160--Hb_002639_080 Hb_000922_030--Hb_000358_050 Hb_000922_030--Hb_135572_010 Hb_000922_030--Hb_004143_160 Hb_000365_240 Hb_000365_240 Hb_000922_030--Hb_000365_240 Hb_007472_090 Hb_007472_090 Hb_000922_030--Hb_007472_090 Hb_004208_050 Hb_004208_050 Hb_000358_050--Hb_004208_050 Hb_011485_060 Hb_011485_060 Hb_000358_050--Hb_011485_060 Hb_000358_050--Hb_135572_010 Hb_055062_040--Hb_003280_020 Hb_084670_010 Hb_084670_010 Hb_055062_040--Hb_084670_010 Hb_055062_040--Hb_004048_120 Hb_012733_070 Hb_012733_070 Hb_055062_040--Hb_012733_070 Hb_055062_040--Hb_002749_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.47988 6.69848 6.56998 10.8559 7.65466 7.91559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.89794 4.23275 6.32 15.8732 15.484

CAGE analysis