Hb_084670_010

Information

Type -
Description -
Location Contig84670: 737-1713
Sequence    

Annotation

kegg
ID mdm:103402563
description thiamine biosynthetic bifunctional enzyme TH1, chloroplastic-like
nr
ID XP_012071303.1
description PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q5M731
description Thiamine biosynthetic bifunctional enzyme TH1, chloroplastic OS=Arabidopsis thaliana GN=TH1 PE=1 SV=1
trembl
ID A0A067KRT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04989 PE=3 SV=1
Gene Ontology
ID GO:0009570
description thiamine biosynthetic bifunctional enzyme chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60238: 423-1265 , PASA_asmbl_60239: 889-1058 , PASA_asmbl_60240: 1333-1441
cDNA
(Sanger)
(ID:Location)		 018_J24.ab1: 423-1265

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084670_010 0.0 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_055062_040 0.077396967 - - ceramidase, putative [Ricinus communis]
3 Hb_000358_050 0.0793626606 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
4 Hb_011537_060 0.083409405 - - UPF0061 protein azo1574 [Morus notabilis]
5 Hb_001159_010 0.0860087409 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007558_100 0.0885863273 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
7 Hb_016347_010 0.0889577691 - - protein transporter, putative [Ricinus communis]
8 Hb_001975_150 0.0916456083 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
9 Hb_004677_050 0.09322252 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
10 Hb_000363_040 0.0953861216 - - Protein transport protein Sec24A, putative [Ricinus communis]
11 Hb_011485_060 0.0968059262 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
12 Hb_000896_050 0.0970751601 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
13 Hb_004048_120 0.0972472159 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
14 Hb_004317_060 0.0973201979 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
15 Hb_002025_330 0.1001217532 - - peptide transporter, putative [Ricinus communis]
16 Hb_000363_190 0.1013301783 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
17 Hb_003340_010 0.1016629011 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
18 Hb_122968_010 0.1021561864 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
19 Hb_000841_050 0.1021673453 - - hypothetical protein L484_019972 [Morus notabilis]
20 Hb_002749_060 0.103141875 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_084670_010 Hb_084670_010 Hb_055062_040 Hb_055062_040 Hb_084670_010--Hb_055062_040 Hb_000358_050 Hb_000358_050 Hb_084670_010--Hb_000358_050 Hb_011537_060 Hb_011537_060 Hb_084670_010--Hb_011537_060 Hb_001159_010 Hb_001159_010 Hb_084670_010--Hb_001159_010 Hb_007558_100 Hb_007558_100 Hb_084670_010--Hb_007558_100 Hb_016347_010 Hb_016347_010 Hb_084670_010--Hb_016347_010 Hb_002025_330 Hb_002025_330 Hb_055062_040--Hb_002025_330 Hb_003280_020 Hb_003280_020 Hb_055062_040--Hb_003280_020 Hb_004048_120 Hb_004048_120 Hb_055062_040--Hb_004048_120 Hb_012733_070 Hb_012733_070 Hb_055062_040--Hb_012733_070 Hb_002749_060 Hb_002749_060 Hb_055062_040--Hb_002749_060 Hb_000358_050--Hb_004048_120 Hb_004143_160 Hb_004143_160 Hb_000358_050--Hb_004143_160 Hb_004208_050 Hb_004208_050 Hb_000358_050--Hb_004208_050 Hb_000922_030 Hb_000922_030 Hb_000358_050--Hb_000922_030 Hb_011485_060 Hb_011485_060 Hb_000358_050--Hb_011485_060 Hb_135572_010 Hb_135572_010 Hb_000358_050--Hb_135572_010 Hb_001975_150 Hb_001975_150 Hb_011537_060--Hb_001975_150 Hb_007933_040 Hb_007933_040 Hb_011537_060--Hb_007933_040 Hb_004218_180 Hb_004218_180 Hb_011537_060--Hb_004218_180 Hb_005489_040 Hb_005489_040 Hb_011537_060--Hb_005489_040 Hb_003340_010 Hb_003340_010 Hb_011537_060--Hb_003340_010 Hb_002874_110 Hb_002874_110 Hb_011537_060--Hb_002874_110 Hb_034083_020 Hb_034083_020 Hb_001159_010--Hb_034083_020 Hb_000909_080 Hb_000909_080 Hb_001159_010--Hb_000909_080 Hb_000365_010 Hb_000365_010 Hb_001159_010--Hb_000365_010 Hb_001159_010--Hb_004218_180 Hb_011224_050 Hb_011224_050 Hb_001159_010--Hb_011224_050 Hb_000429_150 Hb_000429_150 Hb_007558_100--Hb_000429_150 Hb_002414_060 Hb_002414_060 Hb_007558_100--Hb_002414_060 Hb_012678_020 Hb_012678_020 Hb_007558_100--Hb_012678_020 Hb_002686_310 Hb_002686_310 Hb_007558_100--Hb_002686_310 Hb_007558_100--Hb_055062_040 Hb_000363_040 Hb_000363_040 Hb_016347_010--Hb_000363_040 Hb_000327_250 Hb_000327_250 Hb_016347_010--Hb_000327_250 Hb_004677_050 Hb_004677_050 Hb_016347_010--Hb_004677_050 Hb_002908_050 Hb_002908_050 Hb_016347_010--Hb_002908_050 Hb_003544_030 Hb_003544_030 Hb_016347_010--Hb_003544_030 Hb_021576_010 Hb_021576_010 Hb_016347_010--Hb_021576_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.705277 1.60583 1.55078 2.62709 0.955184 1.98549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21599 1.59323 1.47805 3.99343 3.40253

CAGE analysis