Hb_000365_010

Information

Type -
Description -
Location Contig365: 3919-7891
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10920g
description POPTRDRAFT_653209; hypothetical protein
nr
ID XP_002308255.1
description hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
swissprot
ID Q9ZVH7
description Protein FATTY ACID EXPORT 3, chloroplastic OS=Arabidopsis thaliana GN=FAX3 PE=2 SV=2
trembl
ID B9HDJ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s10920g PE=4 SV=1
Gene Ontology
ID GO:0009507
description transmembrane proteins

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37519: 3934-7927 , PASA_asmbl_37520: 3934-7922 , PASA_asmbl_37521: 6748-6928
cDNA
(Sanger)
(ID:Location)		 028_P08.ab1: 3934-5328 , 039_L09.ab1: 3934-5027 , 051_L15.ab1: 3934-4985

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_010 0.0 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
2 Hb_000909_080 0.0788940827 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
3 Hb_001301_280 0.0802966852 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000358_020 0.0843995717 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
5 Hb_001141_240 0.0890412691 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
6 Hb_011224_050 0.0932528049 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
7 Hb_001951_060 0.0934756101 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
8 Hb_000035_260 0.0935365361 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
9 Hb_002615_030 0.0935565661 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
10 Hb_001080_300 0.0935745939 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
11 Hb_005218_080 0.0953821141 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_028487_160 0.0962307095 - - clathrin assembly protein, putative [Ricinus communis]
13 Hb_004218_180 0.0963274893 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
14 Hb_000088_260 0.0978723402 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
15 Hb_034083_020 0.0986017686 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000035_350 0.0991477353 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
17 Hb_000599_210 0.0995054148 - - serine/threonine-protein kinase, putative [Ricinus communis]
18 Hb_001571_060 0.0997145814 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
19 Hb_001159_010 0.0999766093 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000270_480 0.1006313479 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]

Gene co-expression network

sample Hb_000365_010 Hb_000365_010 Hb_000909_080 Hb_000909_080 Hb_000365_010--Hb_000909_080 Hb_001301_280 Hb_001301_280 Hb_000365_010--Hb_001301_280 Hb_000358_020 Hb_000358_020 Hb_000365_010--Hb_000358_020 Hb_001141_240 Hb_001141_240 Hb_000365_010--Hb_001141_240 Hb_011224_050 Hb_011224_050 Hb_000365_010--Hb_011224_050 Hb_001951_060 Hb_001951_060 Hb_000365_010--Hb_001951_060 Hb_000909_080--Hb_000358_020 Hb_034083_020 Hb_034083_020 Hb_000909_080--Hb_034083_020 Hb_003440_020 Hb_003440_020 Hb_000909_080--Hb_003440_020 Hb_055690_010 Hb_055690_010 Hb_000909_080--Hb_055690_010 Hb_001105_100 Hb_001105_100 Hb_000909_080--Hb_001105_100 Hb_002486_080 Hb_002486_080 Hb_001301_280--Hb_002486_080 Hb_001301_280--Hb_001951_060 Hb_011671_120 Hb_011671_120 Hb_001301_280--Hb_011671_120 Hb_007416_070 Hb_007416_070 Hb_001301_280--Hb_007416_070 Hb_001619_060 Hb_001619_060 Hb_001301_280--Hb_001619_060 Hb_000358_020--Hb_055690_010 Hb_000358_020--Hb_003440_020 Hb_005218_080 Hb_005218_080 Hb_000358_020--Hb_005218_080 Hb_000035_350 Hb_000035_350 Hb_000358_020--Hb_000035_350 Hb_030736_040 Hb_030736_040 Hb_000358_020--Hb_030736_040 Hb_006100_020 Hb_006100_020 Hb_001141_240--Hb_006100_020 Hb_000815_300 Hb_000815_300 Hb_001141_240--Hb_000815_300 Hb_006210_010 Hb_006210_010 Hb_001141_240--Hb_006210_010 Hb_000139_080 Hb_000139_080 Hb_001141_240--Hb_000139_080 Hb_001811_170 Hb_001811_170 Hb_001141_240--Hb_001811_170 Hb_006970_020 Hb_006970_020 Hb_001141_240--Hb_006970_020 Hb_015675_040 Hb_015675_040 Hb_011224_050--Hb_015675_040 Hb_003878_150 Hb_003878_150 Hb_011224_050--Hb_003878_150 Hb_001195_400 Hb_001195_400 Hb_011224_050--Hb_001195_400 Hb_001975_150 Hb_001975_150 Hb_011224_050--Hb_001975_150 Hb_000504_180 Hb_000504_180 Hb_011224_050--Hb_000504_180 Hb_028487_160 Hb_028487_160 Hb_011224_050--Hb_028487_160 Hb_001951_060--Hb_034083_020 Hb_001951_060--Hb_002486_080 Hb_001951_060--Hb_007416_070 Hb_005016_010 Hb_005016_010 Hb_001951_060--Hb_005016_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.07853 24.2431 29.0634 43.6102 6.83228 14.2782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6716 28.0796 15.6447 29.708 43.6799

CAGE analysis