Hb_000358_020

Information

Type -
Description -
Location Contig358: 26852-31976
Sequence    

Annotation

kegg
ID rcu:RCOM_1411270
description hypothetical protein
nr
ID XP_012071361.1
description PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
swissprot
ID Q8BJ56
description Patatin-like phospholipase domain-containing protein 2 OS=Mus musculus GN=Pnpla2 PE=1 SV=1
trembl
ID A0A067KRQ0
description Patatin OS=Jatropha curcas GN=JCGZ_05048 PE=3 SV=1
Gene Ontology
ID GO:0016787
description patatin-like phospholipase domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36872: 26842-31847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_020 0.0 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
2 Hb_000909_080 0.0575088062 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
3 Hb_055690_010 0.063096957 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
4 Hb_003440_020 0.0672546522 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_005218_080 0.0689883538 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000035_350 0.0717616068 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
7 Hb_030736_040 0.0746127489 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
8 Hb_171718_010 0.0811151005 - - PREDICTED: disease resistance protein At4g27190-like [Eucalyptus grandis]
9 Hb_000365_010 0.0843995717 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
10 Hb_002762_110 0.0849254212 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001141_240 0.0873592173 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
12 Hb_001117_110 0.0893542278 - - PREDICTED: dynamin-2A [Jatropha curcas]
13 Hb_000088_260 0.0895748466 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
14 Hb_106890_010 0.0900073853 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
15 Hb_004218_180 0.0902983252 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
16 Hb_000638_130 0.0919295285 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
17 Hb_034083_020 0.0926384149 - - conserved hypothetical protein [Ricinus communis]
18 Hb_180378_010 0.0927619484 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
19 Hb_008705_020 0.0943021367 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
20 Hb_003517_070 0.0955081769 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]

Gene co-expression network

sample Hb_000358_020 Hb_000358_020 Hb_000909_080 Hb_000909_080 Hb_000358_020--Hb_000909_080 Hb_055690_010 Hb_055690_010 Hb_000358_020--Hb_055690_010 Hb_003440_020 Hb_003440_020 Hb_000358_020--Hb_003440_020 Hb_005218_080 Hb_005218_080 Hb_000358_020--Hb_005218_080 Hb_000035_350 Hb_000035_350 Hb_000358_020--Hb_000035_350 Hb_030736_040 Hb_030736_040 Hb_000358_020--Hb_030736_040 Hb_034083_020 Hb_034083_020 Hb_000909_080--Hb_034083_020 Hb_000909_080--Hb_003440_020 Hb_000909_080--Hb_055690_010 Hb_000365_010 Hb_000365_010 Hb_000909_080--Hb_000365_010 Hb_001105_100 Hb_001105_100 Hb_000909_080--Hb_001105_100 Hb_000585_110 Hb_000585_110 Hb_055690_010--Hb_000585_110 Hb_055690_010--Hb_030736_040 Hb_002150_020 Hb_002150_020 Hb_055690_010--Hb_002150_020 Hb_008375_010 Hb_008375_010 Hb_055690_010--Hb_008375_010 Hb_005571_010 Hb_005571_010 Hb_055690_010--Hb_005571_010 Hb_003440_020--Hb_005218_080 Hb_003440_020--Hb_055690_010 Hb_000890_080 Hb_000890_080 Hb_003440_020--Hb_000890_080 Hb_106890_010 Hb_106890_010 Hb_003440_020--Hb_106890_010 Hb_005218_080--Hb_000909_080 Hb_008147_080 Hb_008147_080 Hb_005218_080--Hb_008147_080 Hb_171718_010 Hb_171718_010 Hb_005218_080--Hb_171718_010 Hb_002762_110 Hb_002762_110 Hb_005218_080--Hb_002762_110 Hb_000035_350--Hb_171718_010 Hb_000088_260 Hb_000088_260 Hb_000035_350--Hb_000088_260 Hb_000638_130 Hb_000638_130 Hb_000035_350--Hb_000638_130 Hb_000035_350--Hb_005218_080 Hb_000035_350--Hb_030736_040 Hb_001117_110 Hb_001117_110 Hb_030736_040--Hb_001117_110 Hb_030736_040--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_030736_040--Hb_003355_010 Hb_068804_090 Hb_068804_090 Hb_030736_040--Hb_068804_090 Hb_008705_020 Hb_008705_020 Hb_030736_040--Hb_008705_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41552 6.77493 10.3531 11.5026 3.17068 3.2169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.40402 7.32425 6.50478 10.7549 17.6362

CAGE analysis