Hb_068804_090

Information

Type -
Description -
Location Contig68804: 51457-62725
Sequence    

Annotation

kegg
ID rcu:RCOM_0230710
description oligopeptidase A, putative (EC:3.4.24.70)
nr
ID XP_012079534.1
description PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
swissprot
ID Q94AM1
description Organellar oligopeptidase A, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OOP PE=1 SV=1
trembl
ID A0A067KAX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12629 PE=3 SV=1
Gene Ontology
ID GO:0004222
description probable cytosolic oligopeptidase a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54124: 51482-62609 , PASA_asmbl_54125: 51482-62609
cDNA
(Sanger)
(ID:Location)		 022_C09.ab1: 61101-62609 , 022_D24.ab1: 57335-62609

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068804_090 0.0 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
2 Hb_000748_090 0.053820734 - - glucose inhibited division protein A, putative [Ricinus communis]
3 Hb_013749_050 0.0541082933 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
4 Hb_007012_030 0.0620306839 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
5 Hb_000243_120 0.0642320929 - - PREDICTED: MORC family CW-type zinc finger protein 3-like isoform X2 [Jatropha curcas]
6 Hb_030736_040 0.0669795377 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
7 Hb_004629_030 0.0679907006 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_004705_160 0.081473867 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
9 Hb_001117_110 0.0816160303 - - PREDICTED: dynamin-2A [Jatropha curcas]
10 Hb_138585_030 0.0832520874 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
11 Hb_000617_250 0.0839230143 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
12 Hb_002600_070 0.0857548029 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
13 Hb_001307_100 0.0859997357 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_000482_050 0.0873060202 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
15 Hb_000586_020 0.0884728389 desease resistance Gene Name: NB-ARC hypothetical protein F383_02497 [Gossypium arboreum]
16 Hb_000510_190 0.0894294433 - - glutathione reductase [Hevea brasiliensis]
17 Hb_004111_030 0.0898166773 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
18 Hb_009158_060 0.0902850007 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
19 Hb_005305_130 0.0905687492 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
20 Hb_048476_080 0.0922115768 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]

Gene co-expression network

sample Hb_068804_090 Hb_068804_090 Hb_000748_090 Hb_000748_090 Hb_068804_090--Hb_000748_090 Hb_013749_050 Hb_013749_050 Hb_068804_090--Hb_013749_050 Hb_007012_030 Hb_007012_030 Hb_068804_090--Hb_007012_030 Hb_000243_120 Hb_000243_120 Hb_068804_090--Hb_000243_120 Hb_030736_040 Hb_030736_040 Hb_068804_090--Hb_030736_040 Hb_004629_030 Hb_004629_030 Hb_068804_090--Hb_004629_030 Hb_000748_090--Hb_007012_030 Hb_002600_070 Hb_002600_070 Hb_000748_090--Hb_002600_070 Hb_004324_360 Hb_004324_360 Hb_000748_090--Hb_004324_360 Hb_021596_020 Hb_021596_020 Hb_000748_090--Hb_021596_020 Hb_000482_050 Hb_000482_050 Hb_000748_090--Hb_000482_050 Hb_002973_110 Hb_002973_110 Hb_013749_050--Hb_002973_110 Hb_004111_030 Hb_004111_030 Hb_013749_050--Hb_004111_030 Hb_013749_050--Hb_030736_040 Hb_013749_050--Hb_000243_120 Hb_000617_250 Hb_000617_250 Hb_013749_050--Hb_000617_250 Hb_007012_030--Hb_002600_070 Hb_007012_030--Hb_000617_250 Hb_007012_030--Hb_000482_050 Hb_007012_030--Hb_004324_360 Hb_009158_060 Hb_009158_060 Hb_000243_120--Hb_009158_060 Hb_000243_120--Hb_030736_040 Hb_106890_010 Hb_106890_010 Hb_000243_120--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_000243_120--Hb_003355_010 Hb_001117_110 Hb_001117_110 Hb_030736_040--Hb_001117_110 Hb_030736_040--Hb_106890_010 Hb_055690_010 Hb_055690_010 Hb_030736_040--Hb_055690_010 Hb_030736_040--Hb_003355_010 Hb_008705_020 Hb_008705_020 Hb_030736_040--Hb_008705_020 Hb_004629_030--Hb_000482_050 Hb_004629_030--Hb_000748_090 Hb_004629_030--Hb_007012_030 Hb_000358_040 Hb_000358_040 Hb_004629_030--Hb_000358_040 Hb_004629_030--Hb_000617_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39437 10.7486 15.7127 10.2504 4.54361 4.76779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.25049 4.64402 5.89423 9.25699 22.6767

CAGE analysis