Hb_000482_050

Information

Type -
Description -
Location Contig482: 43482-47540
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24440g
description POPTRDRAFT_819485; hypothetical protein
nr
ID XP_012077275.1
description PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
swissprot
ID Q84KI6
description UDP-sulfoquinovose synthase, chloroplastic OS=Spinacia oleracea GN=SQD1 PE=1 SV=1
trembl
ID A0A067KCZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07662 PE=4 SV=1
Gene Ontology
ID GO:0008146
description udp-sulfoquinovose chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44772: 43449-47550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_050 0.0 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
2 Hb_002828_060 0.0648857444 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
3 Hb_004629_030 0.0652748175 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_001396_020 0.0720421768 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
5 Hb_002600_070 0.0733781307 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
6 Hb_007012_030 0.0738203809 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
7 Hb_000748_090 0.0756506496 - - glucose inhibited division protein A, putative [Ricinus communis]
8 Hb_000300_560 0.0762263839 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
9 Hb_000617_250 0.0838437288 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
10 Hb_005305_130 0.0849488631 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
11 Hb_000771_170 0.0849696588 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_001277_340 0.0851877913 - - aldo/keto reductase, putative [Ricinus communis]
13 Hb_003462_060 0.0859975094 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
14 Hb_068079_010 0.0862018951 - - -
15 Hb_068804_090 0.0873060202 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
16 Hb_029552_020 0.0892440994 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012779_080 0.0908167899 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
18 Hb_009158_060 0.0914464067 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
19 Hb_001140_180 0.0935703905 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
20 Hb_001439_070 0.0943313991 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000482_050 Hb_000482_050 Hb_002828_060 Hb_002828_060 Hb_000482_050--Hb_002828_060 Hb_004629_030 Hb_004629_030 Hb_000482_050--Hb_004629_030 Hb_001396_020 Hb_001396_020 Hb_000482_050--Hb_001396_020 Hb_002600_070 Hb_002600_070 Hb_000482_050--Hb_002600_070 Hb_007012_030 Hb_007012_030 Hb_000482_050--Hb_007012_030 Hb_000748_090 Hb_000748_090 Hb_000482_050--Hb_000748_090 Hb_003490_060 Hb_003490_060 Hb_002828_060--Hb_003490_060 Hb_068079_010 Hb_068079_010 Hb_002828_060--Hb_068079_010 Hb_000510_190 Hb_000510_190 Hb_002828_060--Hb_000510_190 Hb_002249_080 Hb_002249_080 Hb_002828_060--Hb_002249_080 Hb_001140_180 Hb_001140_180 Hb_002828_060--Hb_001140_180 Hb_068804_090 Hb_068804_090 Hb_004629_030--Hb_068804_090 Hb_004629_030--Hb_000748_090 Hb_004629_030--Hb_007012_030 Hb_000358_040 Hb_000358_040 Hb_004629_030--Hb_000358_040 Hb_000617_250 Hb_000617_250 Hb_004629_030--Hb_000617_250 Hb_001279_020 Hb_001279_020 Hb_001396_020--Hb_001279_020 Hb_000300_560 Hb_000300_560 Hb_001396_020--Hb_000300_560 Hb_001396_020--Hb_002600_070 Hb_000529_130 Hb_000529_130 Hb_001396_020--Hb_000529_130 Hb_012779_080 Hb_012779_080 Hb_001396_020--Hb_012779_080 Hb_002600_070--Hb_000748_090 Hb_002600_070--Hb_007012_030 Hb_000771_170 Hb_000771_170 Hb_002600_070--Hb_000771_170 Hb_001277_340 Hb_001277_340 Hb_002600_070--Hb_001277_340 Hb_009158_060 Hb_009158_060 Hb_002600_070--Hb_009158_060 Hb_007012_030--Hb_000748_090 Hb_007012_030--Hb_068804_090 Hb_007012_030--Hb_000617_250 Hb_004324_360 Hb_004324_360 Hb_007012_030--Hb_004324_360 Hb_000748_090--Hb_068804_090 Hb_000748_090--Hb_004324_360 Hb_021596_020 Hb_021596_020 Hb_000748_090--Hb_021596_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4268 29.0329 51.8798 29.7807 14.6008 14.5225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7495 8.33789 7.80106 22.4528 59.8011

CAGE analysis