Hb_002828_060

Information

Type -
Description -
Location Contig2828: 102180-105053
Sequence    

Annotation

kegg
ID rcu:RCOM_1474470
description Phytol kinase 1, chloroplast precursor, putative
nr
ID XP_012078507.1
description PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
swissprot
ID Q2N2K0
description Probable phytol kinase 3, chloroplastic OS=Glycine max PE=2 SV=1
trembl
ID A0A067LBJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17344 PE=4 SV=1
Gene Ontology
ID GO:0052668
description probable phytol kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29589: 103553-103946 , PASA_asmbl_29590: 102215-104912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002828_060 0.0 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
2 Hb_003490_060 0.0539165319 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
3 Hb_068079_010 0.0633482076 - - -
4 Hb_000482_050 0.0648857444 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
5 Hb_000510_190 0.0794156276 - - glutathione reductase [Hevea brasiliensis]
6 Hb_002249_080 0.0795488026 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
7 Hb_001140_180 0.0806527241 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
8 Hb_000862_100 0.0833085212 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
9 Hb_106890_010 0.0859772461 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
10 Hb_004629_030 0.0874336828 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_006916_050 0.0886418249 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
12 Hb_005305_130 0.0888406625 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
13 Hb_000617_250 0.0895612489 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
14 Hb_003355_010 0.0900256922 - - Heat shock 70 kDa protein, putative [Ricinus communis]
15 Hb_000748_090 0.091675337 - - glucose inhibited division protein A, putative [Ricinus communis]
16 Hb_001439_070 0.0921943163 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_000358_210 0.0923672011 - - oligosaccharyl transferase, putative [Ricinus communis]
18 Hb_068804_090 0.0924880116 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
19 Hb_000108_020 0.0926055558 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
20 Hb_007012_030 0.0928755802 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002828_060 Hb_002828_060 Hb_003490_060 Hb_003490_060 Hb_002828_060--Hb_003490_060 Hb_068079_010 Hb_068079_010 Hb_002828_060--Hb_068079_010 Hb_000482_050 Hb_000482_050 Hb_002828_060--Hb_000482_050 Hb_000510_190 Hb_000510_190 Hb_002828_060--Hb_000510_190 Hb_002249_080 Hb_002249_080 Hb_002828_060--Hb_002249_080 Hb_001140_180 Hb_001140_180 Hb_002828_060--Hb_001140_180 Hb_106890_010 Hb_106890_010 Hb_003490_060--Hb_106890_010 Hb_000976_110 Hb_000976_110 Hb_003490_060--Hb_000976_110 Hb_002392_020 Hb_002392_020 Hb_003490_060--Hb_002392_020 Hb_000109_260 Hb_000109_260 Hb_003490_060--Hb_000109_260 Hb_003355_010 Hb_003355_010 Hb_003490_060--Hb_003355_010 Hb_000108_020 Hb_000108_020 Hb_068079_010--Hb_000108_020 Hb_000862_100 Hb_000862_100 Hb_068079_010--Hb_000862_100 Hb_022693_130 Hb_022693_130 Hb_068079_010--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_068079_010--Hb_000645_180 Hb_004705_160 Hb_004705_160 Hb_068079_010--Hb_004705_160 Hb_004629_030 Hb_004629_030 Hb_000482_050--Hb_004629_030 Hb_001396_020 Hb_001396_020 Hb_000482_050--Hb_001396_020 Hb_002600_070 Hb_002600_070 Hb_000482_050--Hb_002600_070 Hb_007012_030 Hb_007012_030 Hb_000482_050--Hb_007012_030 Hb_000748_090 Hb_000748_090 Hb_000482_050--Hb_000748_090 Hb_000487_370 Hb_000487_370 Hb_000510_190--Hb_000487_370 Hb_000414_080 Hb_000414_080 Hb_000510_190--Hb_000414_080 Hb_000510_190--Hb_002249_080 Hb_009296_020 Hb_009296_020 Hb_000510_190--Hb_009296_020 Hb_000510_190--Hb_003490_060 Hb_000585_110 Hb_000585_110 Hb_002249_080--Hb_000585_110 Hb_006916_050 Hb_006916_050 Hb_002249_080--Hb_006916_050 Hb_000007_090 Hb_000007_090 Hb_002249_080--Hb_000007_090 Hb_015884_020 Hb_015884_020 Hb_002249_080--Hb_015884_020 Hb_029552_020 Hb_029552_020 Hb_001140_180--Hb_029552_020 Hb_001279_020 Hb_001279_020 Hb_001140_180--Hb_001279_020 Hb_000562_070 Hb_000562_070 Hb_001140_180--Hb_000562_070 Hb_001053_080 Hb_001053_080 Hb_001140_180--Hb_001053_080 Hb_001411_130 Hb_001411_130 Hb_001140_180--Hb_001411_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.0624 12.7879 25.122 20.8627 7.92567 8.35299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.03222 4.5062 4.86167 16.4014 33.4209

CAGE analysis