Hb_002392_020

Information

Type -
Description -
Location Contig2392: 18696-26183
Sequence    

Annotation

kegg
ID rcu:RCOM_0255510
description glucosaminephosphotransferase, putative (EC:2.7.8.15)
nr
ID XP_012085942.1
description PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
swissprot
ID P0CD61
description UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Dictyostelium discoideum GN=alg7 PE=3 SV=1
trembl
ID A0A067JQI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22447 PE=4 SV=1
Gene Ontology
ID GO:0016021
description udp-n-acetylglucosamine--dolichyl-phosphate n-acetylglucosaminephosphotransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25083: 18701-26281 , PASA_asmbl_25084: 25032-25293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002392_020 0.0 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
2 Hb_003490_060 0.0675393201 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
3 Hb_000358_210 0.0715797342 - - oligosaccharyl transferase, putative [Ricinus communis]
4 Hb_001434_020 0.083942292 - - hypothetical protein RCOM_0841800 [Ricinus communis]
5 Hb_007943_150 0.0876313122 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
6 Hb_002284_100 0.0879111673 - - ribophorin, putative [Ricinus communis]
7 Hb_002232_490 0.0904032542 - - PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
8 Hb_106890_010 0.0922546446 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
9 Hb_000265_070 0.0929353852 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
10 Hb_022092_010 0.0931654615 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
11 Hb_002639_030 0.0931738925 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
12 Hb_000976_110 0.0943498308 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
13 Hb_007741_120 0.0992086945 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
14 Hb_024570_040 0.1008269753 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
15 Hb_003490_050 0.1009407259 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
16 Hb_005854_040 0.1011187584 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001504_060 0.101275359 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
18 Hb_002828_060 0.1022209991 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
19 Hb_000027_200 0.1030397695 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
20 Hb_019654_020 0.1030526213 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_002392_020 Hb_002392_020 Hb_003490_060 Hb_003490_060 Hb_002392_020--Hb_003490_060 Hb_000358_210 Hb_000358_210 Hb_002392_020--Hb_000358_210 Hb_001434_020 Hb_001434_020 Hb_002392_020--Hb_001434_020 Hb_007943_150 Hb_007943_150 Hb_002392_020--Hb_007943_150 Hb_002284_100 Hb_002284_100 Hb_002392_020--Hb_002284_100 Hb_002232_490 Hb_002232_490 Hb_002392_020--Hb_002232_490 Hb_002828_060 Hb_002828_060 Hb_003490_060--Hb_002828_060 Hb_106890_010 Hb_106890_010 Hb_003490_060--Hb_106890_010 Hb_000976_110 Hb_000976_110 Hb_003490_060--Hb_000976_110 Hb_000109_260 Hb_000109_260 Hb_003490_060--Hb_000109_260 Hb_003355_010 Hb_003355_010 Hb_003490_060--Hb_003355_010 Hb_000265_070 Hb_000265_070 Hb_000358_210--Hb_000265_070 Hb_070624_010 Hb_070624_010 Hb_000358_210--Hb_070624_010 Hb_000926_060 Hb_000926_060 Hb_000358_210--Hb_000926_060 Hb_000358_210--Hb_003490_060 Hb_000358_210--Hb_002284_100 Hb_001677_100 Hb_001677_100 Hb_001434_020--Hb_001677_100 Hb_001434_020--Hb_007943_150 Hb_009296_020 Hb_009296_020 Hb_001434_020--Hb_009296_020 Hb_001434_020--Hb_000358_210 Hb_001434_020--Hb_070624_010 Hb_000496_130 Hb_000496_130 Hb_007943_150--Hb_000496_130 Hb_007943_150--Hb_000265_070 Hb_005588_100 Hb_005588_100 Hb_007943_150--Hb_005588_100 Hb_000696_190 Hb_000696_190 Hb_007943_150--Hb_000696_190 Hb_002552_040 Hb_002552_040 Hb_002284_100--Hb_002552_040 Hb_011214_110 Hb_011214_110 Hb_002284_100--Hb_011214_110 Hb_005846_050 Hb_005846_050 Hb_002284_100--Hb_005846_050 Hb_019654_020 Hb_019654_020 Hb_002284_100--Hb_019654_020 Hb_003490_050 Hb_003490_050 Hb_002232_490--Hb_003490_050 Hb_001226_130 Hb_001226_130 Hb_002232_490--Hb_001226_130 Hb_024570_040 Hb_024570_040 Hb_002232_490--Hb_024570_040 Hb_002232_490--Hb_000109_260 Hb_002232_490--Hb_003490_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.45644 4.31297 11.9587 9.80152 3.69668 4.82314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.8757 2.1041 2.8129 12.6674 12.5318

CAGE analysis