Hb_001434_020

Information

Type -
Description -
Location Contig1434: 6981-8639
Sequence    

Annotation

kegg
ID rcu:RCOM_0841800
description hypothetical protein
nr
ID XP_002528655.1
description hypothetical protein RCOM_0841800 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRN6
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_0841800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11427: 7609-7839 , PASA_asmbl_11428: 8351-8493
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001434_020 0.0 - - hypothetical protein RCOM_0841800 [Ricinus communis]
2 Hb_001677_100 0.0808686949 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
3 Hb_002392_020 0.083942292 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
4 Hb_007943_150 0.0861588532 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
5 Hb_009296_020 0.0966376315 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
6 Hb_000358_210 0.0979156504 - - oligosaccharyl transferase, putative [Ricinus communis]
7 Hb_070624_010 0.1017366313 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
8 Hb_002284_100 0.1025523709 - - ribophorin, putative [Ricinus communis]
9 Hb_000230_530 0.1064719183 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004746_010 0.1125941244 - - aldo/keto reductase, putative [Ricinus communis]
11 Hb_000265_070 0.1130505287 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
12 Hb_002849_050 0.113808054 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
13 Hb_024758_020 0.1152046696 - - acyl-CoA binding protein 3B [Vernicia fordii]
14 Hb_003490_060 0.118417657 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
15 Hb_011214_110 0.11880677 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
16 Hb_000496_130 0.1215221482 - - PREDICTED: fructokinase-1 [Jatropha curcas]
17 Hb_000926_060 0.1216092942 - - conserved hypothetical protein [Ricinus communis]
18 Hb_022092_010 0.1218271671 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
19 Hb_005854_040 0.1229428432 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005588_100 0.1237252968 - - protein phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001434_020 Hb_001434_020 Hb_001677_100 Hb_001677_100 Hb_001434_020--Hb_001677_100 Hb_002392_020 Hb_002392_020 Hb_001434_020--Hb_002392_020 Hb_007943_150 Hb_007943_150 Hb_001434_020--Hb_007943_150 Hb_009296_020 Hb_009296_020 Hb_001434_020--Hb_009296_020 Hb_000358_210 Hb_000358_210 Hb_001434_020--Hb_000358_210 Hb_070624_010 Hb_070624_010 Hb_001434_020--Hb_070624_010 Hb_004297_090 Hb_004297_090 Hb_001677_100--Hb_004297_090 Hb_001677_100--Hb_009296_020 Hb_000260_400 Hb_000260_400 Hb_001677_100--Hb_000260_400 Hb_011214_110 Hb_011214_110 Hb_001677_100--Hb_011214_110 Hb_002849_050 Hb_002849_050 Hb_001677_100--Hb_002849_050 Hb_003490_060 Hb_003490_060 Hb_002392_020--Hb_003490_060 Hb_002392_020--Hb_000358_210 Hb_002392_020--Hb_007943_150 Hb_002284_100 Hb_002284_100 Hb_002392_020--Hb_002284_100 Hb_002232_490 Hb_002232_490 Hb_002392_020--Hb_002232_490 Hb_000496_130 Hb_000496_130 Hb_007943_150--Hb_000496_130 Hb_000265_070 Hb_000265_070 Hb_007943_150--Hb_000265_070 Hb_005588_100 Hb_005588_100 Hb_007943_150--Hb_005588_100 Hb_000696_190 Hb_000696_190 Hb_007943_150--Hb_000696_190 Hb_003680_220 Hb_003680_220 Hb_009296_020--Hb_003680_220 Hb_000230_530 Hb_000230_530 Hb_009296_020--Hb_000230_530 Hb_000510_190 Hb_000510_190 Hb_009296_020--Hb_000510_190 Hb_005854_040 Hb_005854_040 Hb_009296_020--Hb_005854_040 Hb_002687_200 Hb_002687_200 Hb_009296_020--Hb_002687_200 Hb_000358_210--Hb_000265_070 Hb_000358_210--Hb_070624_010 Hb_000926_060 Hb_000926_060 Hb_000358_210--Hb_000926_060 Hb_000358_210--Hb_003490_060 Hb_000358_210--Hb_002284_100 Hb_070624_010--Hb_000926_060 Hb_070624_010--Hb_003680_220 Hb_000645_180 Hb_000645_180 Hb_070624_010--Hb_000645_180 Hb_070624_010--Hb_000265_070 Hb_029695_070 Hb_029695_070 Hb_070624_010--Hb_029695_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.865516 1.3197 4.56883 3.27976 1.11234 1.33807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.33399 0.56934 0.660655 3.93695 3.81742

CAGE analysis