Hb_000265_070

Information

Type -
Description -
Location Contig265: 89377-93883
Sequence    

Annotation

kegg
ID gmx:100790187
description glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic-like
nr
ID AIA24558.1
description glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
swissprot
ID P52417
description Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1
trembl
ID A0A059XIW1
description Glucose-1-phosphate adenylyltransferase OS=Hevea brasiliensis GN=SSUI PE=2 SV=1
Gene Ontology
ID GO:0009570
description glucose-1-phosphate adenylyltransferase small subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27685: 89351-93887
cDNA
(Sanger)
(ID:Location)		 052_P21.ab1: 89351-91371

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000265_070 0.0 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
2 Hb_000358_210 0.0604720162 - - oligosaccharyl transferase, putative [Ricinus communis]
3 Hb_009524_030 0.0788751867 - - PREDICTED: uncharacterized protein LOC105650971 [Jatropha curcas]
4 Hb_070624_010 0.0859625842 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
5 Hb_002392_020 0.0929353852 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
6 Hb_007943_150 0.0967276808 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
7 Hb_000645_180 0.0976712091 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
8 Hb_029695_070 0.098546516 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
9 Hb_000496_130 0.1021242386 - - PREDICTED: fructokinase-1 [Jatropha curcas]
10 Hb_000085_070 0.1055981337 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
11 Hb_003355_010 0.1062551597 - - Heat shock 70 kDa protein, putative [Ricinus communis]
12 Hb_001279_090 0.1087188615 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
13 Hb_002044_020 0.1093495636 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
14 Hb_004710_020 0.1094836576 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
15 Hb_002828_060 0.11114716 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
16 Hb_000926_060 0.1122410416 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003490_060 0.1126893343 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
18 Hb_001434_020 0.1130505287 - - hypothetical protein RCOM_0841800 [Ricinus communis]
19 Hb_007741_120 0.1155203073 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
20 Hb_068079_010 0.1193292206 - - -

Gene co-expression network

sample Hb_000265_070 Hb_000265_070 Hb_000358_210 Hb_000358_210 Hb_000265_070--Hb_000358_210 Hb_009524_030 Hb_009524_030 Hb_000265_070--Hb_009524_030 Hb_070624_010 Hb_070624_010 Hb_000265_070--Hb_070624_010 Hb_002392_020 Hb_002392_020 Hb_000265_070--Hb_002392_020 Hb_007943_150 Hb_007943_150 Hb_000265_070--Hb_007943_150 Hb_000645_180 Hb_000645_180 Hb_000265_070--Hb_000645_180 Hb_000358_210--Hb_002392_020 Hb_000358_210--Hb_070624_010 Hb_000926_060 Hb_000926_060 Hb_000358_210--Hb_000926_060 Hb_003490_060 Hb_003490_060 Hb_000358_210--Hb_003490_060 Hb_002284_100 Hb_002284_100 Hb_000358_210--Hb_002284_100 Hb_009524_030--Hb_000358_210 Hb_000085_070 Hb_000085_070 Hb_009524_030--Hb_000085_070 Hb_000116_190 Hb_000116_190 Hb_009524_030--Hb_000116_190 Hb_007741_120 Hb_007741_120 Hb_009524_030--Hb_007741_120 Hb_024570_040 Hb_024570_040 Hb_009524_030--Hb_024570_040 Hb_070624_010--Hb_000926_060 Hb_003680_220 Hb_003680_220 Hb_070624_010--Hb_003680_220 Hb_070624_010--Hb_000645_180 Hb_029695_070 Hb_029695_070 Hb_070624_010--Hb_029695_070 Hb_002392_020--Hb_003490_060 Hb_001434_020 Hb_001434_020 Hb_002392_020--Hb_001434_020 Hb_002392_020--Hb_007943_150 Hb_002392_020--Hb_002284_100 Hb_002232_490 Hb_002232_490 Hb_002392_020--Hb_002232_490 Hb_007943_150--Hb_001434_020 Hb_000496_130 Hb_000496_130 Hb_007943_150--Hb_000496_130 Hb_005588_100 Hb_005588_100 Hb_007943_150--Hb_005588_100 Hb_000696_190 Hb_000696_190 Hb_007943_150--Hb_000696_190 Hb_068079_010 Hb_068079_010 Hb_000645_180--Hb_068079_010 Hb_022693_130 Hb_022693_130 Hb_000645_180--Hb_022693_130 Hb_012779_080 Hb_012779_080 Hb_000645_180--Hb_012779_080 Hb_000108_020 Hb_000108_020 Hb_000645_180--Hb_000108_020 Hb_000320_190 Hb_000320_190 Hb_000645_180--Hb_000320_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6502 14.1338 84.6647 48.4567 25.3672 25.58
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.049 11.151 16.2097 53.9054 84.3693

CAGE analysis