Hb_029695_070

Information

Type -
Description -
Location Contig29695: 34966-39171
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37670g
description POPTRDRAFT_642311; MutT/nudix family protein
nr
ID XP_012071006.1
description PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
swissprot
ID Q94B74
description Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1
trembl
ID A0A067L5C0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01026 PE=3 SV=1
Gene Ontology
ID GO:0000210
description nudix hydrolase 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31059: 35961-36762 , PASA_asmbl_31060: 35067-39171 , PASA_asmbl_31061: 34939-39196 , PASA_asmbl_31063: 35565-35872
cDNA
(Sanger)
(ID:Location)		 051_G06.ab1: 35083-37011

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029695_070 0.0 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
2 Hb_002044_020 0.0805403696 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
3 Hb_070624_010 0.0908418308 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
4 Hb_000265_070 0.098546516 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
5 Hb_000645_180 0.1003080348 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
6 Hb_003160_070 0.1087888965 - - PREDICTED: VIN3-like protein 1 [Jatropha curcas]
7 Hb_005665_090 0.1097011685 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
8 Hb_012779_080 0.1119146544 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
9 Hb_030131_020 0.1174444777 - - Carboxypeptidase B2 precursor, putative [Ricinus communis]
10 Hb_001623_490 0.1186723611 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
11 Hb_000358_210 0.1217461325 - - oligosaccharyl transferase, putative [Ricinus communis]
12 Hb_001390_100 0.1220874528 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
13 Hb_000331_570 0.1226876196 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
14 Hb_000926_060 0.1254194503 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006816_190 0.1267605573 - - calreticulin family protein [Populus trichocarpa]
16 Hb_000181_060 0.1273316531 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
17 Hb_000029_400 0.1273721578 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
18 Hb_000009_020 0.1276981178 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
19 Hb_000676_060 0.1277353573 - - Sec14 cytosolic factor, putative [Ricinus communis]
20 Hb_000094_100 0.1280256993 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]

Gene co-expression network

sample Hb_029695_070 Hb_029695_070 Hb_002044_020 Hb_002044_020 Hb_029695_070--Hb_002044_020 Hb_070624_010 Hb_070624_010 Hb_029695_070--Hb_070624_010 Hb_000265_070 Hb_000265_070 Hb_029695_070--Hb_000265_070 Hb_000645_180 Hb_000645_180 Hb_029695_070--Hb_000645_180 Hb_003160_070 Hb_003160_070 Hb_029695_070--Hb_003160_070 Hb_005665_090 Hb_005665_090 Hb_029695_070--Hb_005665_090 Hb_000094_100 Hb_000094_100 Hb_002044_020--Hb_000094_100 Hb_001789_160 Hb_001789_160 Hb_002044_020--Hb_001789_160 Hb_000061_150 Hb_000061_150 Hb_002044_020--Hb_000061_150 Hb_002044_020--Hb_000645_180 Hb_002044_020--Hb_000265_070 Hb_000926_060 Hb_000926_060 Hb_070624_010--Hb_000926_060 Hb_000358_210 Hb_000358_210 Hb_070624_010--Hb_000358_210 Hb_003680_220 Hb_003680_220 Hb_070624_010--Hb_003680_220 Hb_070624_010--Hb_000645_180 Hb_070624_010--Hb_000265_070 Hb_000265_070--Hb_000358_210 Hb_009524_030 Hb_009524_030 Hb_000265_070--Hb_009524_030 Hb_002392_020 Hb_002392_020 Hb_000265_070--Hb_002392_020 Hb_007943_150 Hb_007943_150 Hb_000265_070--Hb_007943_150 Hb_000265_070--Hb_000645_180 Hb_068079_010 Hb_068079_010 Hb_000645_180--Hb_068079_010 Hb_022693_130 Hb_022693_130 Hb_000645_180--Hb_022693_130 Hb_012779_080 Hb_012779_080 Hb_000645_180--Hb_012779_080 Hb_000108_020 Hb_000108_020 Hb_000645_180--Hb_000108_020 Hb_000320_190 Hb_000320_190 Hb_000645_180--Hb_000320_190 Hb_001160_110 Hb_001160_110 Hb_003160_070--Hb_001160_110 Hb_003160_070--Hb_005665_090 Hb_003640_050 Hb_003640_050 Hb_003160_070--Hb_003640_050 Hb_003160_070--Hb_012779_080 Hb_000792_050 Hb_000792_050 Hb_003160_070--Hb_000792_050 Hb_005665_090--Hb_012779_080 Hb_009288_040 Hb_009288_040 Hb_005665_090--Hb_009288_040 Hb_001623_490 Hb_001623_490 Hb_005665_090--Hb_001623_490 Hb_005665_090--Hb_000320_190 Hb_005665_090--Hb_000645_180 Hb_010620_050 Hb_010620_050 Hb_005665_090--Hb_010620_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5207 5.73925 49.3764 20.2811 8.30153 8.57535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.23779 6.50148 5.36496 17.3335 33.5946

CAGE analysis