Hb_000094_100

Information

Type -
Description -
Location Contig94: 63322-69300
Sequence    

Annotation

kegg
ID rcu:RCOM_1594220
description ATP binding protein, putative
nr
ID XP_012071847.1
description PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
swissprot
ID Q9LN50
description Probable methyltransferase PMT28 OS=Arabidopsis thaliana GN=At1g19430 PE=2 SV=1
trembl
ID A0A067KQK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04426 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable methyltransferase pmt28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63083: 57699-63203 , PASA_asmbl_63085: 63807-69146 , PASA_asmbl_63086: 63807-69146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_100 0.0 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
2 Hb_001789_160 0.0763064161 - - PREDICTED: putative transporter arsB [Jatropha curcas]
3 Hb_012779_080 0.0796678207 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
4 Hb_002915_010 0.0842169159 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
5 Hb_005665_090 0.0882513637 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
6 Hb_010620_050 0.0886983234 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
7 Hb_138585_030 0.0890693872 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
8 Hb_009288_040 0.0894580287 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
9 Hb_000608_390 0.0913038917 - - hypothetical protein B456_010G140700 [Gossypium raimondii]
10 Hb_004837_210 0.0929874988 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
11 Hb_002107_050 0.0959710141 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
12 Hb_001390_100 0.096048065 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
13 Hb_002044_020 0.0965254036 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
14 Hb_010344_020 0.0965471487 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
15 Hb_007217_010 0.0966686308 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
16 Hb_003752_090 0.0979182815 - - chitinase, putative [Ricinus communis]
17 Hb_003071_030 0.0982396621 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
18 Hb_000320_190 0.0995654283 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
19 Hb_002986_090 0.1029733636 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_148146_010 0.1036299189 - - coproporphyrinogen III oxidase [Ziziphus jujuba]

Gene co-expression network

sample Hb_000094_100 Hb_000094_100 Hb_001789_160 Hb_001789_160 Hb_000094_100--Hb_001789_160 Hb_012779_080 Hb_012779_080 Hb_000094_100--Hb_012779_080 Hb_002915_010 Hb_002915_010 Hb_000094_100--Hb_002915_010 Hb_005665_090 Hb_005665_090 Hb_000094_100--Hb_005665_090 Hb_010620_050 Hb_010620_050 Hb_000094_100--Hb_010620_050 Hb_138585_030 Hb_138585_030 Hb_000094_100--Hb_138585_030 Hb_003071_030 Hb_003071_030 Hb_001789_160--Hb_003071_030 Hb_031042_060 Hb_031042_060 Hb_001789_160--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_001789_160--Hb_000302_190 Hb_000613_120 Hb_000613_120 Hb_001789_160--Hb_000613_120 Hb_000260_710 Hb_000260_710 Hb_001789_160--Hb_000260_710 Hb_012779_080--Hb_005665_090 Hb_000320_190 Hb_000320_190 Hb_012779_080--Hb_000320_190 Hb_001623_490 Hb_001623_490 Hb_012779_080--Hb_001623_490 Hb_012779_080--Hb_002915_010 Hb_012779_080--Hb_010620_050 Hb_009288_040 Hb_009288_040 Hb_012779_080--Hb_009288_040 Hb_003883_010 Hb_003883_010 Hb_002915_010--Hb_003883_010 Hb_002915_010--Hb_000320_190 Hb_002107_050 Hb_002107_050 Hb_002915_010--Hb_002107_050 Hb_000680_010 Hb_000680_010 Hb_002915_010--Hb_000680_010 Hb_005665_090--Hb_009288_040 Hb_005665_090--Hb_001623_490 Hb_005665_090--Hb_000320_190 Hb_000645_180 Hb_000645_180 Hb_005665_090--Hb_000645_180 Hb_005665_090--Hb_010620_050 Hb_010620_050--Hb_002107_050 Hb_010620_050--Hb_003071_030 Hb_160271_010 Hb_160271_010 Hb_010620_050--Hb_160271_010 Hb_010620_050--Hb_138585_030 Hb_010620_050--Hb_009288_040 Hb_004705_160 Hb_004705_160 Hb_138585_030--Hb_004705_160 Hb_010344_020 Hb_010344_020 Hb_138585_030--Hb_010344_020 Hb_000116_250 Hb_000116_250 Hb_138585_030--Hb_000116_250 Hb_000579_040 Hb_000579_040 Hb_138585_030--Hb_000579_040 Hb_068804_090 Hb_068804_090 Hb_138585_030--Hb_068804_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.54328 3.94141 17.2555 6.80645 3.36318 2.57693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93155 2.67561 3.11887 3.31503 13.8324

CAGE analysis