Hb_000116_250

Information

Type -
Description -
Location Contig116: 217507-226265
Sequence    

Annotation

kegg
ID vvi:100253902
description DNA mismatch repair protein MLH3
nr
ID XP_012065405.1
description PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
swissprot
ID F4JN26
description DNA mismatch repair protein MLH3 OS=Arabidopsis thaliana GN=MLH3 PE=2 SV=2
trembl
ID A0A067L5V4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22399 PE=4 SV=1
Gene Ontology
ID GO:0097159
description dna mismatch repair protein mlh3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04844: 217502-226213 , PASA_asmbl_04845: 224030-225088 , PASA_asmbl_04846: 219974-221199 , PASA_asmbl_04847: 219974-221024 , PASA_asmbl_04848: 222299-222691
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_250 0.0 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
2 Hb_138585_030 0.0761457922 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
3 Hb_001390_100 0.0818941524 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
4 Hb_000585_110 0.0857285982 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
5 Hb_003355_010 0.0897888547 - - Heat shock 70 kDa protein, putative [Ricinus communis]
6 Hb_003440_020 0.0899031869 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_000007_090 0.0906199018 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
8 Hb_003680_220 0.0931306622 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
9 Hb_005686_130 0.0941667687 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
10 Hb_007441_310 0.094580537 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
11 Hb_002075_030 0.0965876146 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
12 Hb_000088_260 0.098066247 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
13 Hb_002627_040 0.0992313045 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
14 Hb_001009_140 0.099267552 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
15 Hb_101334_020 0.0993978842 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
16 Hb_049575_010 0.099641788 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
17 Hb_030736_040 0.1006332746 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
18 Hb_021596_020 0.1006852273 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
19 Hb_032631_070 0.1009185147 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
20 Hb_008725_270 0.1019741219 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_250 Hb_000116_250 Hb_138585_030 Hb_138585_030 Hb_000116_250--Hb_138585_030 Hb_001390_100 Hb_001390_100 Hb_000116_250--Hb_001390_100 Hb_000585_110 Hb_000585_110 Hb_000116_250--Hb_000585_110 Hb_003355_010 Hb_003355_010 Hb_000116_250--Hb_003355_010 Hb_003440_020 Hb_003440_020 Hb_000116_250--Hb_003440_020 Hb_000007_090 Hb_000007_090 Hb_000116_250--Hb_000007_090 Hb_004705_160 Hb_004705_160 Hb_138585_030--Hb_004705_160 Hb_010344_020 Hb_010344_020 Hb_138585_030--Hb_010344_020 Hb_000579_040 Hb_000579_040 Hb_138585_030--Hb_000579_040 Hb_010620_050 Hb_010620_050 Hb_138585_030--Hb_010620_050 Hb_068804_090 Hb_068804_090 Hb_138585_030--Hb_068804_090 Hb_101334_020 Hb_101334_020 Hb_001390_100--Hb_101334_020 Hb_025194_090 Hb_025194_090 Hb_001390_100--Hb_025194_090 Hb_000094_100 Hb_000094_100 Hb_001390_100--Hb_000094_100 Hb_000496_130 Hb_000496_130 Hb_001390_100--Hb_000496_130 Hb_001390_100--Hb_138585_030 Hb_055690_010 Hb_055690_010 Hb_000585_110--Hb_055690_010 Hb_002249_080 Hb_002249_080 Hb_000585_110--Hb_002249_080 Hb_000585_110--Hb_000007_090 Hb_007441_310 Hb_007441_310 Hb_000585_110--Hb_007441_310 Hb_019654_020 Hb_019654_020 Hb_000585_110--Hb_019654_020 Hb_000417_390 Hb_000417_390 Hb_000585_110--Hb_000417_390 Hb_106890_010 Hb_106890_010 Hb_003355_010--Hb_106890_010 Hb_030736_040 Hb_030736_040 Hb_003355_010--Hb_030736_040 Hb_005571_010 Hb_005571_010 Hb_003355_010--Hb_005571_010 Hb_003355_010--Hb_000496_130 Hb_007741_120 Hb_007741_120 Hb_003355_010--Hb_007741_120 Hb_003490_060 Hb_003490_060 Hb_003355_010--Hb_003490_060 Hb_000358_020 Hb_000358_020 Hb_003440_020--Hb_000358_020 Hb_000909_080 Hb_000909_080 Hb_003440_020--Hb_000909_080 Hb_005218_080 Hb_005218_080 Hb_003440_020--Hb_005218_080 Hb_003440_020--Hb_055690_010 Hb_000890_080 Hb_000890_080 Hb_003440_020--Hb_000890_080 Hb_003440_020--Hb_106890_010 Hb_002687_200 Hb_002687_200 Hb_000007_090--Hb_002687_200 Hb_003680_220 Hb_003680_220 Hb_000007_090--Hb_003680_220 Hb_000007_090--Hb_002249_080 Hb_008725_270 Hb_008725_270 Hb_000007_090--Hb_008725_270 Hb_000007_090--Hb_019654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.886212 1.30153 4.83179 3.06016 0.6497 0.959568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.876144 1.54738 1.43305 2.30804 4.43613

CAGE analysis