Hb_007441_310

Information

Type -
Description -
Location Contig7441: 200558-203368
Sequence    

Annotation

kegg
ID rcu:RCOM_0658810
description hypothetical protein
nr
ID XP_012083757.1
description PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
swissprot
ID Q9M903
description Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic OS=Arabidopsis thaliana GN=TGD4 PE=1 SV=1
trembl
ID A0A067JY57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14677 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein trigalactosyldiacylglycerol chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56647: 200567-203387 , PASA_asmbl_56648: 200724-203066
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_310 0.0 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
2 Hb_008375_010 0.0637943783 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
3 Hb_032631_070 0.0681284984 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
4 Hb_000585_110 0.069059941 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
5 Hb_000397_150 0.072428355 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
6 Hb_055690_010 0.0757610466 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
7 Hb_001195_770 0.076645506 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
8 Hb_000816_200 0.0772194184 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
9 Hb_002075_030 0.0793304052 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
10 Hb_001628_120 0.0884140342 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
11 Hb_000579_040 0.0907337036 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
12 Hb_000049_180 0.0908071258 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
13 Hb_008705_020 0.0911228608 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
14 Hb_003355_010 0.0921848133 - - Heat shock 70 kDa protein, putative [Ricinus communis]
15 Hb_001789_200 0.0943699282 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
16 Hb_000116_250 0.094580537 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
17 Hb_002249_080 0.0955817194 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
18 Hb_030736_040 0.0960192121 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
19 Hb_000114_150 0.0962857715 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
20 Hb_002150_020 0.0965618088 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007441_310 Hb_007441_310 Hb_008375_010 Hb_008375_010 Hb_007441_310--Hb_008375_010 Hb_032631_070 Hb_032631_070 Hb_007441_310--Hb_032631_070 Hb_000585_110 Hb_000585_110 Hb_007441_310--Hb_000585_110 Hb_000397_150 Hb_000397_150 Hb_007441_310--Hb_000397_150 Hb_055690_010 Hb_055690_010 Hb_007441_310--Hb_055690_010 Hb_001195_770 Hb_001195_770 Hb_007441_310--Hb_001195_770 Hb_008375_010--Hb_055690_010 Hb_008375_010--Hb_000585_110 Hb_008147_080 Hb_008147_080 Hb_008375_010--Hb_008147_080 Hb_002075_030 Hb_002075_030 Hb_008375_010--Hb_002075_030 Hb_000008_350 Hb_000008_350 Hb_008375_010--Hb_000008_350 Hb_000579_040 Hb_000579_040 Hb_032631_070--Hb_000579_040 Hb_032631_070--Hb_002075_030 Hb_002150_020 Hb_002150_020 Hb_032631_070--Hb_002150_020 Hb_138585_030 Hb_138585_030 Hb_032631_070--Hb_138585_030 Hb_032631_070--Hb_000585_110 Hb_000585_110--Hb_055690_010 Hb_002249_080 Hb_002249_080 Hb_000585_110--Hb_002249_080 Hb_000007_090 Hb_000007_090 Hb_000585_110--Hb_000007_090 Hb_019654_020 Hb_019654_020 Hb_000585_110--Hb_019654_020 Hb_000417_390 Hb_000417_390 Hb_000585_110--Hb_000417_390 Hb_000114_150 Hb_000114_150 Hb_000397_150--Hb_000114_150 Hb_001628_120 Hb_001628_120 Hb_000397_150--Hb_001628_120 Hb_048093_010 Hb_048093_010 Hb_000397_150--Hb_048093_010 Hb_000397_150--Hb_001195_770 Hb_000397_150--Hb_032631_070 Hb_030736_040 Hb_030736_040 Hb_055690_010--Hb_030736_040 Hb_000358_020 Hb_000358_020 Hb_055690_010--Hb_000358_020 Hb_055690_010--Hb_002150_020 Hb_005571_010 Hb_005571_010 Hb_055690_010--Hb_005571_010 Hb_008705_020 Hb_008705_020 Hb_001195_770--Hb_008705_020 Hb_003053_110 Hb_003053_110 Hb_001195_770--Hb_003053_110 Hb_000941_100 Hb_000941_100 Hb_001195_770--Hb_000941_100 Hb_000816_200 Hb_000816_200 Hb_001195_770--Hb_000816_200 Hb_006907_060 Hb_006907_060 Hb_001195_770--Hb_006907_060 Hb_002762_110 Hb_002762_110 Hb_001195_770--Hb_002762_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9982 2.22644 8.03979 7.56695 1.48582 2.26365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.87367 3.02958 2.81098 4.51699 13.045

CAGE analysis