Hb_002075_030

Information

Type -
Description -
Location Contig2075: 70964-93635
Sequence    

Annotation

kegg
ID rcu:RCOM_1316770
description plastidial glycerol-phosphate acyltransferase (EC:2.3.1.15)
nr
ID XP_012080786.1
description PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
swissprot
ID Q39639
description Glycerol-3-phosphate acyltransferase, chloroplastic OS=Cucumis sativus PE=2 SV=1
trembl
ID A0A067K3C0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16136 PE=4 SV=1
Gene Ontology
ID GO:0004366
description glycerol-3-phosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002075_030 0.0 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
2 Hb_032631_070 0.0741006873 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
3 Hb_001307_100 0.0748341607 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_000579_040 0.0766619948 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
5 Hb_007441_310 0.0793304052 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
6 Hb_003029_020 0.0838043646 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
7 Hb_010128_020 0.0847424897 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
8 Hb_000816_200 0.0876825758 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
9 Hb_008375_010 0.0882103519 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
10 Hb_189003_060 0.0883170354 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001195_770 0.0903515141 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
12 Hb_003124_120 0.0916843012 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
13 Hb_025194_090 0.0956157149 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
14 Hb_000116_250 0.0965876146 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
15 Hb_000983_070 0.0969078512 - - conserved hypothetical protein [Ricinus communis]
16 Hb_138585_030 0.0986425947 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
17 Hb_000175_050 0.1007361112 - - -
18 Hb_002053_010 0.1040945314 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
19 Hb_001789_200 0.105664804 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
20 Hb_000951_120 0.1058602039 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]

Gene co-expression network

sample Hb_002075_030 Hb_002075_030 Hb_032631_070 Hb_032631_070 Hb_002075_030--Hb_032631_070 Hb_001307_100 Hb_001307_100 Hb_002075_030--Hb_001307_100 Hb_000579_040 Hb_000579_040 Hb_002075_030--Hb_000579_040 Hb_007441_310 Hb_007441_310 Hb_002075_030--Hb_007441_310 Hb_003029_020 Hb_003029_020 Hb_002075_030--Hb_003029_020 Hb_010128_020 Hb_010128_020 Hb_002075_030--Hb_010128_020 Hb_032631_070--Hb_000579_040 Hb_032631_070--Hb_007441_310 Hb_002150_020 Hb_002150_020 Hb_032631_070--Hb_002150_020 Hb_138585_030 Hb_138585_030 Hb_032631_070--Hb_138585_030 Hb_000585_110 Hb_000585_110 Hb_032631_070--Hb_000585_110 Hb_001307_100--Hb_000579_040 Hb_068804_090 Hb_068804_090 Hb_001307_100--Hb_068804_090 Hb_000088_260 Hb_000088_260 Hb_001307_100--Hb_000088_260 Hb_001307_100--Hb_032631_070 Hb_001307_100--Hb_138585_030 Hb_025194_090 Hb_025194_090 Hb_000579_040--Hb_025194_090 Hb_000579_040--Hb_138585_030 Hb_001143_100 Hb_001143_100 Hb_000579_040--Hb_001143_100 Hb_008375_010 Hb_008375_010 Hb_007441_310--Hb_008375_010 Hb_007441_310--Hb_000585_110 Hb_000397_150 Hb_000397_150 Hb_007441_310--Hb_000397_150 Hb_055690_010 Hb_055690_010 Hb_007441_310--Hb_055690_010 Hb_001195_770 Hb_001195_770 Hb_007441_310--Hb_001195_770 Hb_003029_020--Hb_010128_020 Hb_003029_020--Hb_025194_090 Hb_002542_160 Hb_002542_160 Hb_003029_020--Hb_002542_160 Hb_003171_030 Hb_003171_030 Hb_003029_020--Hb_003171_030 Hb_001438_010 Hb_001438_010 Hb_003029_020--Hb_001438_010 Hb_003124_120 Hb_003124_120 Hb_010128_020--Hb_003124_120 Hb_000983_070 Hb_000983_070 Hb_010128_020--Hb_000983_070 Hb_000816_200 Hb_000816_200 Hb_010128_020--Hb_000816_200 Hb_000112_060 Hb_000112_060 Hb_010128_020--Hb_000112_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55136 5.41216 18.5852 10.7713 2.43936 4.5202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.55924 7.30659 5.5372 7.76649 27.1963

CAGE analysis