Hb_001143_100

Information

Type -
Description -
Location Contig1143: 92626-97740
Sequence    

Annotation

kegg
ID rcu:RCOM_1030560
description porphobilinogen synthase, putative (EC:4.2.1.24)
nr
ID XP_011027511.1
description PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
swissprot
ID Q9SFH9
description Delta-aminolevulinic acid dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=HEMB1 PE=2 SV=1
trembl
ID B9RJ27
description Delta-aminolevulinic acid dehydratase OS=Ricinus communis GN=RCOM_1030560 PE=3 SV=1
Gene Ontology
ID GO:0004655
description delta-aminolevulinic acid chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04328: 92638-97710 , PASA_asmbl_04330: 94267-94895
cDNA
(Sanger)
(ID:Location)		 001_L12.ab1: 92726-95533 , 034_B18.ab1: 94907-97708

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_100 0.0 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
2 Hb_000496_130 0.0851252786 - - PREDICTED: fructokinase-1 [Jatropha curcas]
3 Hb_000579_040 0.0863252439 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
4 Hb_000510_190 0.0886473924 - - glutathione reductase [Hevea brasiliensis]
5 Hb_032631_070 0.0947077164 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
6 Hb_003355_010 0.1004387309 - - Heat shock 70 kDa protein, putative [Ricinus communis]
7 Hb_008375_010 0.1009613443 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
8 Hb_001307_100 0.1031101712 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_004111_030 0.1039662981 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
10 Hb_025194_090 0.1050024836 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
11 Hb_002811_200 0.1075909035 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]
12 Hb_009296_020 0.1080379994 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
13 Hb_106890_010 0.1081287321 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
14 Hb_001405_080 0.1086070045 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
15 Hb_030736_040 0.1091285196 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
16 Hb_000230_530 0.1093650207 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002150_020 0.1117587823 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_002828_060 0.1127900131 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
19 Hb_000414_080 0.1134346499 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
20 Hb_001390_100 0.1147154564 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001143_100 Hb_001143_100 Hb_000496_130 Hb_000496_130 Hb_001143_100--Hb_000496_130 Hb_000579_040 Hb_000579_040 Hb_001143_100--Hb_000579_040 Hb_000510_190 Hb_000510_190 Hb_001143_100--Hb_000510_190 Hb_032631_070 Hb_032631_070 Hb_001143_100--Hb_032631_070 Hb_003355_010 Hb_003355_010 Hb_001143_100--Hb_003355_010 Hb_008375_010 Hb_008375_010 Hb_001143_100--Hb_008375_010 Hb_000496_130--Hb_003355_010 Hb_007943_150 Hb_007943_150 Hb_000496_130--Hb_007943_150 Hb_025194_090 Hb_025194_090 Hb_000496_130--Hb_025194_090 Hb_004710_020 Hb_004710_020 Hb_000496_130--Hb_004710_020 Hb_000496_130--Hb_000510_190 Hb_000579_040--Hb_032631_070 Hb_000579_040--Hb_025194_090 Hb_002075_030 Hb_002075_030 Hb_000579_040--Hb_002075_030 Hb_138585_030 Hb_138585_030 Hb_000579_040--Hb_138585_030 Hb_001307_100 Hb_001307_100 Hb_000579_040--Hb_001307_100 Hb_000487_370 Hb_000487_370 Hb_000510_190--Hb_000487_370 Hb_000414_080 Hb_000414_080 Hb_000510_190--Hb_000414_080 Hb_002828_060 Hb_002828_060 Hb_000510_190--Hb_002828_060 Hb_002249_080 Hb_002249_080 Hb_000510_190--Hb_002249_080 Hb_009296_020 Hb_009296_020 Hb_000510_190--Hb_009296_020 Hb_003490_060 Hb_003490_060 Hb_000510_190--Hb_003490_060 Hb_007441_310 Hb_007441_310 Hb_032631_070--Hb_007441_310 Hb_032631_070--Hb_002075_030 Hb_002150_020 Hb_002150_020 Hb_032631_070--Hb_002150_020 Hb_032631_070--Hb_138585_030 Hb_000585_110 Hb_000585_110 Hb_032631_070--Hb_000585_110 Hb_106890_010 Hb_106890_010 Hb_003355_010--Hb_106890_010 Hb_030736_040 Hb_030736_040 Hb_003355_010--Hb_030736_040 Hb_005571_010 Hb_005571_010 Hb_003355_010--Hb_005571_010 Hb_007741_120 Hb_007741_120 Hb_003355_010--Hb_007741_120 Hb_003355_010--Hb_003490_060 Hb_008375_010--Hb_007441_310 Hb_055690_010 Hb_055690_010 Hb_008375_010--Hb_055690_010 Hb_008375_010--Hb_000585_110 Hb_008147_080 Hb_008147_080 Hb_008375_010--Hb_008147_080 Hb_008375_010--Hb_002075_030 Hb_000008_350 Hb_000008_350 Hb_008375_010--Hb_000008_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.01947 27.4263 75.0202 47.3934 11.9948 18.2269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3719 12.4826 16.5258 50.2698 99.1197

CAGE analysis