Hb_000487_370

Information

Type -
Description -
Location Contig487: 295252-297403
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45035: 298260-298903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_370 0.0 - - -
2 Hb_000414_080 0.0660304612 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
3 Hb_000510_190 0.0708785033 - - glutathione reductase [Hevea brasiliensis]
4 Hb_000594_060 0.0835849961 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
5 Hb_004052_110 0.0924850253 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
6 Hb_001059_060 0.0959096882 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
7 Hb_002249_080 0.0976900362 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
8 Hb_011188_010 0.0982631417 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
9 Hb_001439_070 0.098966067 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_000422_080 0.0989910854 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
11 Hb_006816_010 0.0992723883 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002828_060 0.1029849933 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
13 Hb_002010_090 0.1041123101 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
14 Hb_013968_010 0.1070081818 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
15 Hb_022425_050 0.1072883222 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
16 Hb_001998_210 0.1086599633 - - unnamed protein product [Coffea canephora]
17 Hb_002374_450 0.1097006613 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
18 Hb_004629_030 0.1119927487 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_000482_050 0.1129951812 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
20 Hb_011174_080 0.1136714982 - - PREDICTED: sulfite oxidase [Jatropha curcas]

Gene co-expression network

sample Hb_000487_370 Hb_000487_370 Hb_000414_080 Hb_000414_080 Hb_000487_370--Hb_000414_080 Hb_000510_190 Hb_000510_190 Hb_000487_370--Hb_000510_190 Hb_000594_060 Hb_000594_060 Hb_000487_370--Hb_000594_060 Hb_004052_110 Hb_004052_110 Hb_000487_370--Hb_004052_110 Hb_001059_060 Hb_001059_060 Hb_000487_370--Hb_001059_060 Hb_002249_080 Hb_002249_080 Hb_000487_370--Hb_002249_080 Hb_000414_080--Hb_000510_190 Hb_000414_080--Hb_002249_080 Hb_000422_080 Hb_000422_080 Hb_000414_080--Hb_000422_080 Hb_003175_070 Hb_003175_070 Hb_000414_080--Hb_003175_070 Hb_002374_450 Hb_002374_450 Hb_000414_080--Hb_002374_450 Hb_002828_060 Hb_002828_060 Hb_000510_190--Hb_002828_060 Hb_000510_190--Hb_002249_080 Hb_009296_020 Hb_009296_020 Hb_000510_190--Hb_009296_020 Hb_003490_060 Hb_003490_060 Hb_000510_190--Hb_003490_060 Hb_011188_010 Hb_011188_010 Hb_000594_060--Hb_011188_010 Hb_002432_050 Hb_002432_050 Hb_000594_060--Hb_002432_050 Hb_001663_130 Hb_001663_130 Hb_000594_060--Hb_001663_130 Hb_000594_060--Hb_003175_070 Hb_000594_060--Hb_000414_080 Hb_002259_220 Hb_002259_220 Hb_004052_110--Hb_002259_220 Hb_004052_110--Hb_001059_060 Hb_001998_210 Hb_001998_210 Hb_004052_110--Hb_001998_210 Hb_001865_100 Hb_001865_100 Hb_004052_110--Hb_001865_100 Hb_000979_140 Hb_000979_140 Hb_004052_110--Hb_000979_140 Hb_004052_110--Hb_011188_010 Hb_009078_020 Hb_009078_020 Hb_001059_060--Hb_009078_020 Hb_000853_330 Hb_000853_330 Hb_001059_060--Hb_000853_330 Hb_001059_060--Hb_011188_010 Hb_001059_060--Hb_001998_210 Hb_001439_070 Hb_001439_070 Hb_001059_060--Hb_001439_070 Hb_000585_110 Hb_000585_110 Hb_002249_080--Hb_000585_110 Hb_006916_050 Hb_006916_050 Hb_002249_080--Hb_006916_050 Hb_000007_090 Hb_000007_090 Hb_002249_080--Hb_000007_090 Hb_015884_020 Hb_015884_020 Hb_002249_080--Hb_015884_020 Hb_002249_080--Hb_002828_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05834 2.76953 5.02816 4.28069 0.680016 1.01952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.945622 1.06945 0.437583 2.72658 6.48151

CAGE analysis